PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0358.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YA | ||||||||
Protein Properties | Length: 214aa MW: 23836.5 Da PI: 9.5777 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.6 | 9e-33 | 118 | 174 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekkl +ksrkpylheSRh hAlrR+Rg+gGrF Kaladp0039s0358.2.p 118 EEPVFVNAKQYHGILRRRQSRAKAESEKKL-AKSRKPYLHESRHLHALRRARGCGGRF 174 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.1E-36 | 116 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.422 | 117 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-27 | 119 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-23 | 120 | 142 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 122 | 142 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.1E-23 | 151 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKKNPKITSS VHDPSDYSEA EERQNLTEPQ NQAATDVMMS HSGVRAPNVQ YTTPLQLGTG 60 HTMAPGAYPY PDPYYRSIFA PYDPPSFPSQ SYNPQPMVHM QLMGMQQAGV PLHTDAVEEP 120 VFVNAKQYHG ILRRRQSRAK AESEKKLAKS RKPYLHESRH LHALRRARGC GGRFLNGKKN 180 DNQQNEVPTG DSSQLNALDN SSRANNVQSD GTY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-21 | 117 | 182 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882438.1 | 7e-97 | nuclear transcription factor Y subunit A-7-like isoform X1 | ||||
Swissprot | Q84JP1 | 4e-63 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2I4GVD2 | 8e-95 | A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7 | ||||
STRING | VIT_10s0003g04650.t01 | 3e-95 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-43 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0358.2.p |
Publications ? help Back to Top | |||
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