PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0358.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YA

Protein Properties

Length: 214aa MW: 23836.5 Da PI: 9.5777

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0358.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	9e-33	118	174	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekkl +ksrkpylheSRh hAlrR+Rg+gGrF Kaladp0039s0358.1.p 118 EEPVFVNAKQYHGILRRRQSRAKAESEKKL-AKSRKPYLHESRHLHALRRARGCGGRF 174 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.1E-36	116	177	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.422	117	177	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.1E-27	119	174	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	120	142	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	122	142	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	151	174	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MKKNPKITSS VHDPSDYSEA EERQNLTEPQ NQAATDVMMS HSGVRAPNVQ YTTPLQLGTG 60 HTMAPGAYPY PDPYYRSIFA PYDPPSFPSQ SYNPQPMVHM QLMGMQQAGV PLHTDAVEEP 120 VFVNAKQYHG ILRRRQSRAK AESEKKLAKS RKPYLHESRH LHALRRARGC GGRFLNGKKN 180 DNQQNEVPTG DSSQLNALDN SSRANNVQSD GTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	117	182	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882438.1	7e-97	nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	4e-63	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2I4GVD2	8e-95	A0A2I4GVD2_JUGRE; nuclear transcription factor Y subunit A-7
STRING	VIT_10s0003g04650.t01	3e-95	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-43	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Kaladp0039s0358.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]