PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0245.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 341aa MW: 37443.8 Da PI: 7.5229

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0245.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.9	4e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp++++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d+ Kaladp0039s0245.1.p 15 LPPGFRFHPTDEELVVHYLKRKIDSLPLPV-SIIAEIDLYKFDPWELPSRATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDR 103 79**************************.89***********9888999******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Kaladp0039s0245.1.p 104 PILTVnGTHKVGVKKALVFYGGKPPKGVKTSWIMHEYRL 142 99867788***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-64	8	181	IPR003441	NAC domain
PROSITE profile	PS51005	61.223	15	181	IPR003441	NAC domain
Pfam	PF02365	6.9E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MESADSSTCS QHPQLPPGFR FHPTDEELVV HYLKRKIDSL PLPVSIIAEI DLYKFDPWEL 60 PSRATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDRPILTVNG THKVGVKKAL 120 VFYGGKPPKG VKTSWIMHEY RLVDGSAGNT AFKPPIADAS SSNKKASLRL DDWVLCRIYK 180 KANSQQPMDT SHHAGDSPTD EILIPTSSRQ NYTGLLETPE ENDFFDGIMS HHHPHQLSAS 240 SMLTHLSPGP KQPTLSMVLP AQDHKRAVSE FWMGAGEFKK MNGGDGDERE NGGGSGSGGS 300 FAPLLSANGG GGYHQNFMLG PIGDGYSSRP GYHQLNWNNS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-71	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-71	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-71	15	186	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-71	15	186	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-71	15	186	20	173	NAC domain-containing protein 19
3swm_B	1e-71	15	186	20	173	NAC domain-containing protein 19
3swm_C	1e-71	15	186	20	173	NAC domain-containing protein 19
3swm_D	1e-71	15	186	20	173	NAC domain-containing protein 19
3swp_A	1e-71	15	186	20	173	NAC domain-containing protein 19
3swp_B	1e-71	15	186	20	173	NAC domain-containing protein 19
3swp_C	1e-71	15	186	20	173	NAC domain-containing protein 19
3swp_D	1e-71	15	186	20	173	NAC domain-containing protein 19
4dul_A	1e-71	15	186	17	170	NAC domain-containing protein 19
4dul_B	1e-71	15	186	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293567.1	1e-124	PREDICTED: NAC transcription factor 25
Swissprot	Q8GY42	1e-100	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A286LLT3	1e-118	A0A286LLT3_ROSCH; NAC family protein
STRING	XP_004293567.1	1e-124	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-102	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Kaladp0039s0245.1.p