PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0104.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 128aa    MW: 14433.6 Da    PI: 8.4802
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.3e-41101091100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca Ck+l+rkC++dC++apyfp ++p+kf n+hk+FGasnv+kll++lp+ +r+da++s++yeA ar+rdPv+G+v+ i +lq+q + l
  Kaladp0039s0104.1.p  10 PCACCKFLKRKCPPDCIFAPYFPPQDPHKFINIHKIFGASNVSKLLNELPPYQRSDAVKSMAYEAAARVRDPVHGCVAEICSLQRQAQLL 99 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ++el++++++
  Kaladp0039s0104.1.p 100 QKELEAANAR 109
                          ****998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1539110IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4010107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MASSSFFNSP CACCKFLKRK CPPDCIFAPY FPPQDPHKFI NIHKIFGASN VSKLLNELPP  60
YQRSDAVKSM AYEAAARVRD PVHGCVAEIC SLQRQAQLLQ KELEAANARL RNYETFNSYP  120
YSLPWND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-5281249127LOB family transfactor Ramosa2.1
5ly0_B8e-5281249127LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525551.22e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_006579579.12e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_006579580.12e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_006579581.12e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_020213713.11e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_028231547.12e-56protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_028231548.12e-56protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_029126746.11e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_029126747.11e-56protein LATERAL ORGAN BOUNDARIES
RefseqXP_029126748.11e-56protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML45e-55LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A2G3C9T01e-55A0A2G3C9T0_CAPCH; LOB domain-containing protein 6
STRINGGLYMA05G02530.47e-56(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-57LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]