PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0073.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 523aa    MW: 57478.3 Da    PI: 8.9417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.8e-056383323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++Cgk F r  nL+ H r H
  Kaladp0039s0073.1.p 63 CEICGKGFQRDQNLQLHRRGH 83
                         *******************88 PP
2zf-C2H213.30.00025137159123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Kaladp0039s0073.1.p 137 WKCEKCSKRYAVQSDWKAHSKTC 159
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.32E-76083No hitNo description
PROSITE profilePS5015711.4896183IPR007087Zinc finger, C2H2
SMARTSM003550.0766183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355280102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.32E-7132157No hitNo description
SMARTSM00355130137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSTEEVISSS FIQTPIDGST ATISNPPAST IKKKRSLPGT PDPEAEVIAL SPRTLMATNR  60
FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRSSKEPKKR VYVCPEKTCV HHLPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARVSASNF SNNNGSAAIS SNMCNNNYHF MGTNSMLQTT MGQHHQFNSI  240
FKPMISSSNN ENEESIIYPM RRSSGLSLWN MHQGSALMAQ LGHHQVNNSI LQDQTGLFNP  300
IISSCHTSSP HPQSSVEYPF NWPFGGAKLS PTNNTSGNHE IKNSTMQPLK ELNSTEPQHV  360
VSVPSLYSNQ HQIHQTSNTS TNMSATALLQ KAAQIGATST TDPSVSILSS FSLKPTPHSN  420
NNICQLVQDG NKFCGFFSSP PSSGSVPASV THIVGTNCSD MDHNDVSNSL NHNSQMYPSK  480
RRHIAVQNNE DQNAAAGGGQ TRDFLGVGAQ TLCHPSTMNG WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-38133204372Zinc finger protein JACKDAW
5b3h_F8e-38133204372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881278.10.0zinc finger protein NUTCRACKER-like
RefseqXP_024928109.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-146IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2C9UUT00.0A0A2C9UUT0_MANES; Uncharacterized protein
STRINGcassava4.1_006502m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-137C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]