PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0038s0108.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 441aa MW: 47572 Da PI: 5.986 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 389.5 | 3.7e-119 | 71 | 432 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lLl+cAe+++ ++l++a+ lL ++sel+sp g++ +R+aayf+ AL+ar+ +s+ ++y+ l+ ++ + ++ + +a++ ++ +sP++k Kaladp0038s0108.1.p 71 GLLLQCAECIAMDNLSEASDLLPEISELSSPFGSSPERVAAYFAHALQARIISSCLGTYSPLNIKTLTASHNHRISNAFQSYNSISPLIK 160 58**************************************************************************************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 fsh+taNqaI +a+ege+rvH+iD+di+qGlQWp L++ LasRp++ s+RiTgvgs s++ le+tg+rLa+fA++lg+pfef+++ Kaladp0038s0108.1.p 161 FSHFTANQAIFQALEGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIKSVRITGVGS----SSDLLEATGRRLADFASSLGLPFEFHPFE 246 *********************************************************....9**************************99 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl 271 k + ++l++L v+ gEa++V++++ h l+d ++s +L+l+ l+Pk++++veq+++h +++sFl rf+eal+yysalfd+l Kaladp0038s0108.1.p 247 GKVGNIVDLSQLGVNCGEAVVVHWMH--HCLYDITGSDFG----TLRLLSLLKPKLITIVEQDLSHgGGGSFLGRFVEALHYYSALFDAL 330 999999******************99..777766777777....**********************9999******************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +++ +s er++vE++l+g+ei+n+va g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ eesg+l lg Kaladp0038s0108.1.p 331 GDGAGGDSIERHTVEQQLFGWEIRNIVAVGGPKRTGEVK-VERWGDELGRAGFRPVSLGGSPAAQASLLLGMFPWKGYTLVEESGCLKLG 419 9999*****************************998887.9************************************************* PP GRAS 362 WkdrpLvsvSaWr 374 Wkd +L+++SaW+ Kaladp0038s0108.1.p 420 WKDLSLLTASAWE 432 ************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.149 | 43 | 412 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-116 | 71 | 432 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MLQSLVVSHS SIPTKTSLGM KTKRADRELS CAGVEDDSLL ASGKRPNNVC PAEDESAEEQ 60 GGESSGLRLL GLLLQCAECI AMDNLSEASD LLPEISELSS PFGSSPERVA AYFAHALQAR 120 IISSCLGTYS PLNIKTLTAS HNHRISNAFQ SYNSISPLIK FSHFTANQAI FQALEGEDRV 180 HVIDLDIMQG LQWPGLFHIL ASRPRKIKSV RITGVGSSSD LLEATGRRLA DFASSLGLPF 240 EFHPFEGKVG NIVDLSQLGV NCGEAVVVHW MHHCLYDITG SDFGTLRLLS LLKPKLITIV 300 EQDLSHGGGG SFLGRFVEAL HYYSALFDAL GDGAGGDSIE RHTVEQQLFG WEIRNIVAVG 360 GPKRTGEVKV ERWGDELGRA GFRPVSLGGS PAAQASLLLG MFPWKGYTLV EESGCLKLGW 420 KDLSLLTASA WEPCDHRPST * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-162 | 55 | 433 | 5 | 380 | Protein SCARECROW |
5b3h_A | 1e-162 | 55 | 433 | 4 | 379 | Protein SCARECROW |
5b3h_D | 1e-162 | 55 | 433 | 4 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022759889.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A061DTB2 | 0.0 | A0A061DTB2_THECC; SCL domain class transcription factor | ||||
STRING | EOX93173 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 1e-168 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0038s0108.1.p |
Publications ? help Back to Top | |||
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