PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0038s0010.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 557aa    MW: 62753.5 Da    PI: 6.5455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0038s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.1e-5061331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp G+rF+Ptdeel+++yL++k++g+++++ ++i+e+d++k+ePw+Lp    + ++  ew+fF+ rd+k ++++r nrat++gyWkatgk
  Kaladp0038s0010.1.p   6 LPLGYRFRPTDEELIDFYLRNKINGQHHHV-KIIREIDVCKWEPWELPgLsVLPSDGGEWFFFAARDQKFPNSQRLNRATQRGYWKATGK 94 
                          699************************999.89***************6335566777******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++ +g++vg+k+tLvfy+grap+g++t+Wvmheyr 
  Kaladp0038s0010.1.p  95 DRKIKK-RGRDVGMKRTLVFYTGRAPSGKRTNWVMHEYRT 133
                          *****9.999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-583156IPR003441NAC domain
PROSITE profilePS5100554.1116156IPR003441NAC domain
PfamPF023651.0E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSLYALPLGY RFRPTDEELI DFYLRNKING QHHHVKIIRE IDVCKWEPWE LPGLSVLPSD  60
GGEWFFFAAR DQKFPNSQRL NRATQRGYWK ATGKDRKIKK RGRDVGMKRT LVFYTGRAPS  120
GKRTNWVMHE YRTILKELDA THPGQGAYVL CRLFKKNDDT IEDSHHDEVQ SVPTSPVSAA  180
SNLHIKSETE DFFTSGHINN LDPGRCVAGN FDKPAPLPLT SGEGSNMCCS HLDSSGTQPR  240
DITETIMTMT AINSTSQSHL QGDLGSSFPI TSSFNECEWP LQCGMGKQND IFEYLDSVEI  300
HDLRRDIDSH EKISPFQDET MDTDHVLKLT ISRDESNFGR GLDPEVSLEQ LFTELEGNCL  360
SDTGHAIPAF SESAADPENT LFNSDDLEFD LKHYFEDVSF DGSLFYQLSN SSKEESGTSA  420
IGDTGITLRA SNQVNQPGTF DFQSQGTAAR RILLQRRVGS VYHCNHAISH QLEAKSVVSQ  480
EVDLNNVKLI SRTIAPRKWP LFASHGKSKR RPEEFHIRLA KKHKIWAAFA AVLFTVLIAF  540
PGMKLLGKTH MLLDWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43615915171Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.19e-72NAC 014