PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0038s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 233aa    MW: 26588 Da    PI: 6.7686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0038s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-067192626
                         -SGGGGT.S--TTTTT-SS-SS CS
              zf-CCCH  6 Crffart.GtCkyGdrCkFaHg 26
                         C++f ++ G+C+ G+ C+FaHg
  Kaladp0038s0004.1.p 71 CPNFKANdGECPLGEACCFAHG 92
                         666655426************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8176594IPR000571Zinc finger, CCCH-type
SMARTSM003560.0286593IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-57195IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-47192IPR000571Zinc finger, CCCH-type
SMARTSM0035661102125IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRGRITAVYQ YRDPRVDDAY YSSDEFRMFG FKILPCPRTR SHDWTDCPLA HRGEKAQRRD  60
PSVFNYMAIA CPNFKANDGE CPLGEACCFA HGIFEYWLHP AKYRTRPCHM GHLCQRKVCF  120
FAHGPHQLRT EIKYKVQWSN NNSLDGVTQI DSLTGLPIPK STAADGFDPM KPHFDSNSRQ  180
RLSSINETEV TRRLGELSVV EGIPTDAGFA CLPNLPEIDW VSQLLDDENI DW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-61C3H family protein