PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0437.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27680.3 Da PI: 9.1289 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.1e-25 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien++nrqvtfskRrng+ KKA+ELSvLCd++ a+i+fs++g+ Kaladp0037s0437.1.p 9 KKIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDLALIMFSPSGR 53 68****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.315 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-29 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.98E-36 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 4.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-25 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRVKLEIKK IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDLALIMFSP SGRPSLFSGK 60 KSSFEQILNR YTSLPEHERG RIFEGNPSDI TTLAEVNYNE KILEDTLKRV RMRKVQVAQD 120 FMLVNDGHGV SWTPNMYSLD SLGMQVQRRT PQLQILNFIG SGCLPPASRS ELRRSIEMSP 180 QHQTSNLISL HNLQGSHEHS LSPSSGTEIE NNNINQAASH YNGCGAQPFD VNISPWTQFY 240 TPATGL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6byy_A | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_B | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_C | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6byy_D | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6bz1_A | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6bz1_B | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6bz1_C | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6bz1_D | 6e-18 | 1 | 78 | 1 | 77 | MEF2 CHIMERA |
6c9l_A | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-18 | 1 | 78 | 1 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572503.1 | 3e-54 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
TrEMBL | A5BY19 | 3e-65 | A5BY19_VITVI; Uncharacterized protein | ||||
STRING | XP_010105468.1 | 4e-65 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 5e-36 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0437.1.p |