PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0037s0398.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 229aa MW: 25316.5 Da PI: 9.5568

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0398.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	2e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v gLt++hvkSHLQkYRl Kaladp0037s0398.1.p 48 KQRLRWTSDLHDRFVDAIAQLGGPDRATPKGVLRVMGVSGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.452	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-32	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-26	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-24	135	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MYQAKKFSTT NLIPHKAQGA ERVAIVTTPD ESTVKGTASS PPTSGNSKQR LRWTSDLHDR 60 FVDAIAQLGG PDRATPKGVL RVMGVSGLTI YHVKSHLQKY RLAKYLPESS ADGSKDDKKG 120 SGDSLSSLDS PPGLQINEAL RMQMEVQRRL HEQLEVQRQL QMRIEAQGKY LQKIIEEQQK 180 LGSTIKASEL EALDEEQPTS GAGGQSGPRK RLRIDVEEQS KVWDREDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243654.1	1e-103	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Swissprot	Q9SJW0	2e-77	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2G5EC04	2e-99	A0A2G5EC04_AQUCA; Uncharacterized protein
STRING	XP_009345372.1	1e-101	(Pyrus x bretschneideri)
STRING	XP_009347649.1	1e-101	(Pyrus x bretschneideri)
STRING	XP_009347650.1	1e-101	(Pyrus x bretschneideri)
STRING	XP_008392505.1	1e-101	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0037s0398.1.p