PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0037s0297.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 521aa MW: 57868.2 Da PI: 7.2438 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 24 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+ ++r +A+k+gLte+qV+ WF+ rR k+k+ Kaladp0037s0297.3.p 24 RKRKLKTPAQLEALEEYYEDHKYPTDSMRSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 5 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-17 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-20 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-17 | 24 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.72E-18 | 24 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence Send to blast |
MEDSDADSLD GRAEEDKTPV ETSRKRKLKT PAQLEALEEY YEDHKYPTDS MRSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRL SKDETLGSGR MERSSGVIQE HFSGPGQDSC GSTKPGEYKN 120 ADMRDVESQL LAGQELSPMK LAYHNRMNTG SLDGDMDDTS SESSSPLRPS HLPQRDVPQR 180 WENLRYSIPK GPAVPSNPKV AIGGQFRRPS GYLKIKPKAE HPAITAVKRQ LGMNFRVDGP 240 PLGIEFQPPP VDAFQAGPKD TATGPRDGIG SLVPNISGSS YHGAQFEEGP RVNHGSELFY 300 SHHQSRPKYS VSDNIKLDHG WGPSPNLDKE YAEEAYGSKR NLFNEEKYGS KGLRIQPISS 360 VPFQPSHNIS GVNPMIAQRS KYLKNKLSDT KSRQREPRDT FERRMYAREP EIEKHHSVSS 420 NTSERPNLIP VTATPEYKLM DKQLVAARND PVEYPNPNSE QIGVYNNELK DKKARFGYSQ 480 PDFGKTMSLA INRGKGAAGA IPSSFSEDET GETSSSGDDE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-56 | HB-other family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0037s0297.3.p |