PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0037s0297.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 538aa MW: 59952.6 Da PI: 8.2041

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0297.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.3e-20	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+ ++r +A+k+gLte+qV+ WF+ rR k+k+ Kaladp0037s0297.2.p 24 RKRKLKTPAQLEALEEYYEDHKYPTDSMRSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-20	5	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.65E-17	19	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.4E-20	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-17	24	79	IPR001356	Homeobox domain
CDD	cd00086	8.53E-18	24	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MEDSDADSLD GRAEEDKTPV ETSRKRKLKT PAQLEALEEY YEDHKYPTDS MRSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRL SKDETLGSGR MERSSGVIQE HFSGPGQDSC GSTKPGEYKN 120 ADMRDVESQL LAGQELSPMK LAYHNRMNTG SLDGDMDDTS SESSSPLRPS HLPQRDVPQR 180 WENLRYSIPK GPAVPSNPKV AIGGQFRRPS GYLKIKPKAE HPAITAVKRQ LGMNFRVDGP 240 PLGIEFQPPP VDAFQAGPKD TATGPRDGIG SLVPNISGSS YHGAQFRRKM HDGSFKPDHS 300 YLKEEGPRVN HGSELFYSHH QSRPKYSVSD NIKLDHGWGP SPNLDKEYAE EAYGSKRNLF 360 NEEKYGSKGL RIQPISSVPF QPSHNISGVN PMIAQRSKYL KNKLSDTKSR QREPRDTFER 420 RMYAREPEIE KHHSVSSNTS ERPNLIPVTA TPEYKLMDKQ LVAARNDPVE YPNPNSEQIG 480 VYNNELKDKK ARFGYSQPDF GKTMSLAINR GKGAAGAIPS SFSEDETGET SSSGDDE*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MEDSDADSLD GRAEEDKTPV ETSRKRKLKT PAQLEALEEY YEDHKYPTDS MRSAIAEKIG  60
LTEKQVSGWF CHRRLKDKRL SKDETLGSGR MERSSGVIQE HFSGPGQDSC GSTKPGEYKN  120
ADMRDVESQL LAGQELSPMK LAYHNRMNTG SLDGDMDDTS SESSSPLRPS HLPQRDVPQR  180
WENLRYSIPK GPAVPSNPKV AIGGQFRRPS GYLKIKPKAE HPAITAVKRQ LGMNFRVDGP  240
PLGIEFQPPP VDAFQAGPKD TATGPRDGIG SLVPNISGSS YHGAQFRRKM HDGSFKPDHS  300
YLKEEGPRVN HGSELFYSHH QSRPKYSVSD NIKLDHGWGP SPNLDKEYAE EAYGSKRNLF  360
NEEKYGSKGL RIQPISSVPF QPSHNISGVN PMIAQRSKYL KNKLSDTKSR QREPRDTFER  420
RMYAREPEIE KHHSVSSNTS ERPNLIPVTA TPEYKLMDKQ LVAARNDPVE YPNPNSEQIG  480
VYNNELKDKK ARFGYSQPDF GKTMSLAINR GKGAAGAIPS SFSEDETGET SSSGDDE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-56	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kaladp0037s0297.2.p