PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0267.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | AP2 | ||||||||
Protein Properties | Length: 568aa MW: 61031.7 Da PI: 6.9041 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33 | 1.5e-10 | 171 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Kaladp0037s0267.1.p 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDMAALKYWG 227 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 47 | 6.3e-15 | 272 | 321 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Kaladp0037s0267.1.p 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.1E-8 | 171 | 227 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.33E-18 | 171 | 237 | No hit | No description |
SuperFamily | SSF54171 | 3.27E-14 | 171 | 237 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.148 | 172 | 235 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-22 | 172 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 172 | 236 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 173 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 270 | 330 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.20E-23 | 270 | 329 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 271 | 329 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 271 | 335 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 271 | 329 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 272 | 321 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 311 | 331 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MSSHTSQEGH HFSLGLINHN LDTSFQTHEW NLMDTQHGES DCPKVVADFM GVGKSSSHHH 60 SDLTTYNQLH HQATSTEPDY LYLNNTSLYG IQNAVPLSTV TANSSFEYQD NANSLESLTL 120 SMGSNNSSKR STCETSTVGE NSNANSTATA AIVEAAPAAR RTLDSFGQRT SIYRGVTRHR 180 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDM AALKYWGTST TTNFPISNYE 240 KELEDMKNMT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 300 TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM NRYDVKSILE SNTLPIGGGA AKRLKEAQAI 360 ETSRKREEML ALGCSSSTFH YNPSGVGRLA PAAASSYPLM HHYQFEHSGN NLLGLQNQDV 420 LSHQLAQDSG SYSYLQTQLQ LQQQGAQGGS YPHLYNGYLH SNPGFIHGLI GMGGGGSTGG 480 SLSLDHSNNV GYNLGNNVGS SGGGGGLGLG SDVGAGSGQL DLGMVKVDYD MAAQGGGGGG 540 YGGGGWNAEG AGASNGNNGG VFAMWND* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982598.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A371G8Q5 | 0.0 | A0A371G8Q5_MUCPR; AP2-like ethylene-responsive transcription factor PLT1 (Fragment) | ||||
STRING | EOY32584 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-166 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0267.1.p |