PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0167.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-X1
Protein Properties Length: 865aa    MW: 97004 Da    PI: 8.4795
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.8e-06185203120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG H+C  lCH+GpCp+Cp+
  Kaladp0037s0167.1.p 185 CG-HRCLLLCHPGPCPSCPK 203
                          **.***************96 PP
2zf-NF-X120.41.1e-06240256420
             zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                          H+C ++CHeGpCppC++
  Kaladp0037s0167.1.p 240 HRCAEICHEGPCPPCKE 256
                          ***************96 PP
3zf-NF-X118.54.3e-06290309120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CGkHkC+k CH G+C++Cp+
  Kaladp0037s0167.1.p 290 CGKHKCSKGCHSGDCGKCPL 309
                          ******************95 PP
4zf-NF-X117.21.1e-05397416120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG+H C + C+ G+CppC++
  Kaladp0037s0167.1.p 397 CGRHACRRRCCDGDCPPCSE 416
                          ******************85 PP
5zf-NF-X117.49.7e-06418442119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkC ++CH+GpC pCp
  Kaladp0037s0167.1.p 418 CGkrlrckNHKCPSPCHRGPCAPCP 442
                          777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.48E-571145No hitNo description
PROSITE patternPS01359072139IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.16E-6173221No hitNo description
SMARTSM004380.012185203IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016185202IPR000967Zinc finger, NF-X1-type
CDDcd060083.18E-9227275No hitNo description
SMARTSM004384.2E-4237256IPR000967Zinc finger, NF-X1-type
PfamPF014224.0E-4240255IPR000967Zinc finger, NF-X1-type
CDDcd060082.32E-8280323No hitNo description
SMARTSM004380.0011290309IPR000967Zinc finger, NF-X1-type
PfamPF014220.0068290308IPR000967Zinc finger, NF-X1-type
CDDcd060082.39E-8334383No hitNo description
SMARTSM004380.047344364IPR000967Zinc finger, NF-X1-type
PfamPF014220.0039344363IPR000967Zinc finger, NF-X1-type
CDDcd060081.90E-8387435No hitNo description
SMARTSM004380.013397416IPR000967Zinc finger, NF-X1-type
PfamPF014228.4E-4397415IPR000967Zinc finger, NF-X1-type
CDDcd060083.07E-11414462No hitNo description
PfamPF014220.0031418442IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079424443IPR000967Zinc finger, NF-X1-type
PfamPF01422180470476IPR000967Zinc finger, NF-X1-type
SMARTSM0043837481502IPR000967Zinc finger, NF-X1-type
PfamPF0142211491501IPR000967Zinc finger, NF-X1-type
SMARTSM00438140510555IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7592619IPR000967Zinc finger, NF-X1-type
PfamPF014220.14592602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0036629647IPR000967Zinc finger, NF-X1-type
PfamPF014220.031629646IPR000967Zinc finger, NF-X1-type
SMARTSM004388.9692713IPR000967Zinc finger, NF-X1-type
PfamPF014224.9694706IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MISSTTERRR FASDSDSDSD AGNSPTNSQS LSHTDLSTSI FKSYIELSGN SSPDLSKIQS  60
FLTSSRSGAL SCLICLERIR ISDPTWSCSS RCFAVFHLVC IQSWARQSLD LAAARAATRL  120
SADLFPNAAA NFVWNCPKCR VEYSKTLIPK SYFCFCGKVQ DPPSDPWILP HSCGEVCDRP  180
LPRNCGHRCL LLCHPGPCPS CPKLVNARCF CSASEKVVRC GFKEFSCNKR CSKLLDCRAH  240
RCAEICHEGP CPPCKERAFY KCQCGKTNEE KECCDRHFQC QIPCEKMLGC GKHKCSKGCH  300
SGDCGKCPLQ GRRTCPCGKK VYEGMSCDVS VPLCGSTCEK LLACGFHKCP ERCHRGPCIE  360
TCRTVVLKSC RCGGLRKEIP CFQDLACERK CNKVRDCGRH ACRRRCCDGD CPPCSEVCGK  420
RLRCKNHKCP SPCHRGPCAP CPIMVSISCA CGETRFEVPC GTEMEQKPPR CRKLCHIAPL  480
CRHSTILKPH KCHYGACPSC RLICEEDYPC GHLCKLRCHG PKPPPNLEFT LKPKKKKSNY  540
VQESIPGTPC PPCPELVWRS CVGQHLGAER MMVCSDRTQF SCDNLCGNPL RCGNHYCTKT  600
CHALKTSQQL GESCEECRLS CQKERSPKCS HSCPRSCHPG DCPPCKVLIK RSCHCGSMVH  660
VFECMYYNSL SEEEQINVRS CHGPCHRKLP YCTHLCPVTC HPGQCPQPDK CSKKVTVRCK  720
CLSVKKEWLC QEVQAAYHKA GSNPEDIPKT QFGVGLLSCN SVCKSKIQVV ESELQMHKPR  780
QMEVKELAAE NIQPKRRKRR ERVQGTKEDN RFQRVIATVK KLFFFITLFF VLIATGYYGY  840
KGLLKLSDWM NEIEEQRLRR PPRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1793799PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271239.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLF6HCC40.0F6HCC4_VITVI; Uncharacterized protein
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors