PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28662.1 Da PI: 4.8619 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.1e-13 | 60 | 102 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ +K++Ka+i + A+ YI++L Kaladp0037s0074.1.p 60 VSERNRRKKLNDRLFALRAVVPNI-----TKMDKASIIKDAISYIQEL 102 57*********************7.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.418 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.36E-14 | 56 | 106 | No hit | No description |
SuperFamily | SSF47459 | 8.77E-18 | 57 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 59 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-15 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-11 | 60 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEDNIGDEYK NYWETNMFLQ TEELDSWGGG LDETAFSGYY DSSSPDGGGA SSSMASKNIV 60 SERNRRKKLN DRLFALRAVV PNITKMDKAS IIKDAISYIQ ELHEQEGRLE AEIAGLENNI 120 RMKSMGSMSP SSYEDLKKPS SRKKKKRIDT TSHDTTNNLS STSASPIEIL ELRVAHMGER 180 SVVVSITCTK RGDTMVKLCE AFESLQLKIL TSNMTTFSSN TLVNTLFIQG EEDETQSIKS 240 EIETAIAALN DARSPMSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 58 | 120 | 9 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | RKKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358594.2 | 1e-108 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-84 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2P5EZP8 | 1e-110 | A0A2P5EZP8_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_008358594.1 | 1e-107 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0074.1.p |