PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0036s0180.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 277aa MW: 30261.8 Da PI: 8.8827

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0036s0180.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.9e-33	22	75	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG+ekAtPk +++lm+v gLt++hvkSHLQ+YR+ Kaladp0036s0180.1.p 22 PRLRWTPELHSCFVQAIERLGGQEKATPKLVMQLMDVRGLTISHVKSHLQMYRS 75 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-31	18	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.606	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	8.06E-16	20	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-24	22	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	23	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVSCGRSGSG GGVRQYVRSK VPRLRWTPEL HSCFVQAIER LGGQEKATPK LVMQLMDVRG 60 LTISHVKSHL QMYRSMKSDL SRQADLNSSH LGKHSFEDHD GDVDEEQDDG HQMKLQLHYS 120 SKPTSESDSH LVYNINPPKR ARFEMSGARS RAVVPDHRQG GGIYDTFIIS AAGPSSSSTT 180 STMLLSQNPY NSSINAPLGF PVKESDFLQA VNKVDKNGCR RRMISNAEAE DGPIRLSLSL 240 SLFHPSTNRS VASSTSEASE TIISSPAYSK GCSNSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281928.1	4e-70	PREDICTED: myb family transcription factor APL
TrEMBL	D7SMG8	1e-68	D7SMG8_VITVI; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	2e-69	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	5e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0036s0180.1.p