PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0130.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 419aa    MW: 47026 Da    PI: 8.6573
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-1685143255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GV++++++gr++A+++d  ++n+   k+ k+++lg +g +e Aa a++ a++k++g
  Kaladp0036s0130.1.p  85 TFRGVTRHRWTGRYEAHLWDkNCWNQsqnKKgKQVYLGAYGDEEAAAHAYDLAALKYWG 143
                          69******************999977766447*************************98 PP
2AP251.91.9e-16186237155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ +++g
  Kaladp0036s0130.1.p 186 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAEAYDMAAIEYRG 237
                          89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-1684153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-1585152IPR001471AP2/ERF domain
PROSITE profilePS5103219.37585151IPR001471AP2/ERF domain
SMARTSM003801.6E-2485157IPR001471AP2/ERF domain
PfamPF008479.9E-1286143IPR001471AP2/ERF domain
PRINTSPR003671.7E-58697IPR001471AP2/ERF domain
PfamPF008477.6E-12186237IPR001471AP2/ERF domain
CDDcd000182.10E-23186247No hitNo description
SuperFamilySSF541712.03E-17186247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-18187246IPR001471AP2/ERF domain
PROSITE profilePS5103218.558187245IPR001471AP2/ERF domain
SMARTSM003804.3E-27187251IPR001471AP2/ERF domain
PRINTSPR003671.7E-5227247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MPKVPHPDQN QITRTNKDQM ESHNKKKKSE IKKDSADAIC TDKKLINIAA ALKVDAAVTN  60
KKKKQQPRRS RKAVPRDAPP QRTSTFRGVT RHRWTGRYEA HLWDKNCWNQ SQNKKGKQVY  120
LGAYGDEEAA AHAYDLAALK YWGPQSILNF PLSTYEEELK GMEDQSREEY IGSLRRKSSG  180
FSRGVSKYRG VARHHHNGRW EARIGRVLGN KYLYLGTFAT QEEAAEAYDM AAIEYRGLNA  240
VTNFDLSRYA KWLSCSHQEP NAHKSDSNLM SHNQLGHHQA ADSSLFTFPA ASLSENYTSE  300
DADEAAPIRH DRLTAAASLS VFNDLLGRRT QNSKEEFYPS YSNTTTTSAA ATLSSGEDSD  360
SKSSSALTNK RFFPDDIQTI FGTTDFIHIG SEDMIFGEAE LSSYTSSLFD LDHGFLNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440585.11e-129PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016690345.11e-129PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A0D2Q6I21e-128A0A0D2Q6I2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JJ901e-128A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
STRINGGorai.009G008800.11e-129(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-92ARIA-interacting double AP2 domain protein