PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0063.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 347aa    MW: 39456.6 Da    PI: 7.5364
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.61.7e-38210132129
                  NAM  32 evikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118
                          evi+e+d++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+k
  Kaladp0036s0063.1.p   2 EVIREIDLNKIEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQK 90 
                          579*************963433332556*************************************9.8899******************* PP

                  NAM 119 tdWvmheyrle 129
                          tdW+mheyrle
  Kaladp0036s0063.1.p  91 TDWIMHEYRLE 101
                          *********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.0991123IPR003441NAC domain
SuperFamilySSF1019411.83E-432123IPR003441NAC domain
PfamPF023654.4E-1627100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEVIREIDLN KIEPWDLQER CRIGSTPQNE WYFFSHKDRK YPTGSRTNRA TSAGFWKATG  60
RDKCIRNSFK KIGMRKTLVF YRGRAPHGQK TDWIMHEYRL EDIDDAQSDS SEDGWVVCRV  120
FKKKNLFKAT GNQGSSSTRL HTEHHHYQIP NASIQLNSLR SFSSNSDDQQ QYFLQRHSQL  180
NTSSLNTSQQ AASAGNNNLE GHHIYKPTEL ALHYSHLPMP HYNSLLQVPQ TSLIPSSAHA  240
YSNSAHGLGS DESPVMVKQF MSNPRGQCES GSESMRYQQD RGLEDGTCDG ARPDEGLGEW  300
AMLDRLVTSH QIAGQQHPGD SDRDTHVNHI NQLSLRSEMD FWGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-40112546167NO APICAL MERISTEM PROTEIN
1ut4_B5e-40112546167NO APICAL MERISTEM PROTEIN
1ut7_A5e-40112546167NO APICAL MERISTEM PROTEIN
1ut7_B5e-40112546167NO APICAL MERISTEM PROTEIN
3swm_A7e-40112549170NAC domain-containing protein 19
3swm_B7e-40112549170NAC domain-containing protein 19
3swm_C7e-40112549170NAC domain-containing protein 19
3swm_D7e-40112549170NAC domain-containing protein 19
3swp_A7e-40112549170NAC domain-containing protein 19
3swp_B7e-40112549170NAC domain-containing protein 19
3swp_C7e-40112549170NAC domain-containing protein 19
3swp_D7e-40112549170NAC domain-containing protein 19
4dul_A5e-40112546167NAC domain-containing protein 19
4dul_B5e-40112546167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719841.11e-125protein BEARSKIN2
SwissprotQ9SV871e-105BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A498IWC71e-122A0A498IWC7_MALDO; Uncharacterized protein
STRINGXP_008391860.11e-124(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-108NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]