PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 331aa    MW: 37831.8 Da    PI: 5.0252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.51.9e-387102195
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL +k++g+++el ++i+e+d+yk+ePwdLp k  + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgk
  Kaladp0036s0049.1.p   7 LPPGFRFHPTDEELVAYYLDRKITGQSIEL-DFIPEIDLYKCEPWDLPdKsYLPSKDMEWYFFSLRDRKYPNGSRTNRATSAGYWKATGK 95 
                          79****************************.99**************95335666888******************************** PP

                  NAM  89 dkevlsk 95 
                          d++v s+
  Kaladp0036s0049.1.p  96 DRAVRSQ 102
                          ****984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-513143IPR003441NAC domain
PROSITE profilePS5100538.7177143IPR003441NAC domain
PfamPF023657.7E-228114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSPMTTLPPG FRFHPTDEEL VAYYLDRKIT GQSIELDFIP EIDLYKCEPW DLPDKSYLPS  60
KDMEWYFFSL RDRKYPNGSR TNRATSAGYW KATGKDRAVR SQKKTNWVMH EYRLIHTSSS  120
PSSSSCSLNA LKDSFALCRV FKKTSLIVPQ SKFEKREDTQ NGPNRRRNKI QLQYEESNAI  180
NEAAEDYEES FHPYDNCNNN PSAASSISDA TQERSLVDEK EDMEQANACP FFAASISDEA  240
NSSAPSYLYS PKLDSSDLLF QDLQSFHNNI LAPFDPYAYS PALSLEDFTP LNENNRYREA  300
DHSARTIATF EEIISLCSSQ HHSIPLHIPY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44314511167NO APICAL MERISTEM PROTEIN
1ut4_B2e-44314511167NO APICAL MERISTEM PROTEIN
1ut7_A2e-44314511167NO APICAL MERISTEM PROTEIN
1ut7_B2e-44314511167NO APICAL MERISTEM PROTEIN
3swm_A2e-44314514170NAC domain-containing protein 19
3swm_B2e-44314514170NAC domain-containing protein 19
3swm_C2e-44314514170NAC domain-containing protein 19
3swm_D2e-44314514170NAC domain-containing protein 19
3swp_A2e-44314514170NAC domain-containing protein 19
3swp_B2e-44314514170NAC domain-containing protein 19
3swp_C2e-44314514170NAC domain-containing protein 19
3swp_D2e-44314514170NAC domain-containing protein 19
4dul_A2e-44314511167NAC domain-containing protein 19
4dul_B2e-44314511167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225989.12e-87PREDICTED: NAC domain-containing protein 86
TrEMBLA0A314UQ032e-85A0A314UQ03_PRUYE; NAC domain-containing protein 86
STRINGXP_008225989.19e-87(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.17e-71NAC domain containing protein 20