PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0035s0085.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 413aa    MW: 45977.3 Da    PI: 5.3416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0035s0085.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-11229272654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          n+ Er+RR +   +++ L++llP++      K++ a+i+ +A++YIk+L
  Kaladp0035s0085.2.p 229 NATERKRRVEFSGKYDALKSLLPSP-----NKPDRASIVGEAIDYIKEL 272
                          99**********************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.516223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-12228288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8229272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-11229277No hitNo description
Gene3DG3DSA:4.10.280.104.2E-11229284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAASKDTSSF DATSVPEEGL HVANMMASST TNSFEENMKF PGEEFSHSSH KLGFGIMDNH  60
YYASNSSADN LMQEVLCDSN QDPAGDQMSW NAHGVNEMQN GHRGFHVPNL QDHPYPATHE  120
LLDLFNLPSS LGFLGDHTQP ENMPASANLY DPLYQMSPPP QQPSIRELIQ STLPRCCNFS  180
GLNGSLYGGE DERDVVGGAY QDLEGRDFDS EVLEFTGEKP RKGKGKEGNA TERKRRVEFS  240
GKYDALKSLL PSPNKPDRAS IVGEAIDYIK ELKRTVSELK SLVEKKKCGK ERNKKPKTEE  300
DGFGDYNGSL RCSWLQRKSK DAEVDVRIID DEVTIKLVQR KRINCLLLVT KILDELQLDL  360
QHVAGGHAGD FYSFLFNTKI YEGSYVYATG IANRLLEAVE RQYAAVPPSS KY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663258.11e-114transcription factor bHLH91-like
RefseqXP_028113214.11e-114transcription factor bHLH91-like
RefseqXP_028113215.11e-114transcription factor bHLH91-like
TrEMBLA0A2C9VHJ11e-112A0A2C9VHJ1_MANES; Uncharacterized protein
STRINGcassava4.1_028473m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-75bHLH family protein