PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0035s0079.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 162aa    MW: 19006.6 Da    PI: 9.0377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0035s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.37.5e-5461331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd+elv++yLk+k+++ ++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgk
  Kaladp0035s0079.1.p   6 LPPGFRFHPTDQELVDCYLKRKIHRLEIEL-DIIPEVDLYKCEPWDLAdKsFLPGRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGK 94 
                          79****************************.99**************84334555778******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s +++ +g+kktLv+y+grap+g +t Wvmheyrl
  Kaladp0035s0079.1.p  95 DRRVMS-HSRPIGMKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-594139IPR003441NAC domain
PROSITE profilePS5100553.4456161IPR003441NAC domain
PfamPF023652.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSPVGLPPGF RFHPTDQELV DCYLKRKIHR LEIELDIIPE VDLYKCEPWD LADKSFLPGR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVMS HSRPIGMKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDENECED SSGIQVPTTF PAYYDNALFR T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-49213311140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027168991.16e-93NAC domain-containing protein 86 isoform X1
SwissprotA4VCM03e-78NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A059A4H67e-91A0A059A4H6_EUCGR; Uncharacterized protein
TrEMBLA0A068TRH57e-91A0A068TRH5_COFCA; Uncharacterized protein
STRINGevm.TU.contig_29561.17e-92(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-92NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]