PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0035s0036.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 243aa    MW: 26912 Da    PI: 6.0283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0035s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004497119123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kaladp0035s0036.1.p  97 FSCNYCRRKFFSSQALGGHQNAH 119
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-695125No hitNo description
PROSITE profilePS5015711.30297124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDLNRMAMMR NSDSEDDSEV NILVGSNLSI QGGYFECRDS IRDESSCLRN SHLNSEAISL  60
NLTLHSNSST PVDTDGSDRG AELTTQPPQV PRIQRLFSCN YCRRKFFSSQ ALGGHQNAHK  120
RERTMAKRAM KMGVFSQRYA SLVSLPMHGN AFRAMGLEAH ALTHPTLEPQ PPPRADENSI  180
RKFEHGGYFG VPFFPEDDAV ELPWPGSFRP HDDSNNADFA AMAPPMSNSA SPIPDDDLTL  240
RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176791.19e-64PREDICTED: zinc finger protein 4-like
TrEMBLA0A061E8M61e-58A0A061E8M6_THECC; Zinc finger protein 4
STRINGEOY013112e-59(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-36zinc finger protein 4