PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0035s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 505aa    MW: 55138.4 Da    PI: 6.849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0035s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.22.3e-34562021128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                          lp+G++F+Ptd+el+ e+L++kve+ +        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+
  Kaladp0035s0004.1.p  56 LPAGVKFDPTDQELI-EHLEAKVESINghikshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRK 140
                          799************.99******998665554442...144434766646**********.555666799******************8 PP

                  NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                      + +W++tgk+++vl+ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Kaladp0035s0004.1.p 141 iqteccdpqaGGETRWHKTGKTRPVLA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 202
                          566666665433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3752221IPR003441NAC domain
PROSITE profilePS5100532.39856221IPR003441NAC domain
PfamPF023657.5E-1657202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNKQQLSGEG GVGSSSSMIS SSDLLDAKLE GQQLCGSKHC PGCGHKLDGK PDWLGLPAGV  60
KFDPTDQELI EHLEAKVESI NGHIKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS  120
RHFFHRPSKA YTTGTRKRRK IQTECCDPQA GGETRWHKTG KTRPVLANGK QKGCKKILVL  180
YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWV DRTSSVVPVA  240
DGSTTTGVDA AGRRDSGSCS SSKDINVQVI MAPQHQLVDG DQLRDRQVSA AMAAALSSYG  300
AMDMQQHLKT DPLFTGFVPF RKVCDEVGLG EVATSTTTAG DQVQASTSGT CQEHDLVGQQ  360
PHLHHLHHHL SHQQHPQLNA AFHISRPSPP ISTIISPPPP PLHTRATSIL LNHQDPYHSV  420
AGMMMQNESN YHEQQGMRSS ASSLEELIMV CSSNNSGGGA SGAGPGGDIK AESSMSNPQE  480
AEWLKYSSFW SDPDDHHHNN HHDG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475352.10.0NAC domain-containing protein 75
RefseqXP_006475353.10.0NAC domain-containing protein 75
RefseqXP_024953323.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-154NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A067EL130.0A0A067EL13_CITSI; Uncharacterized protein
STRINGXP_006475352.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-132NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]