PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0034s0058.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 487aa MW: 53867.1 Da PI: 5.9048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0034s0058.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	308	354	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ e+ErrRR+ri+++ ++Lr l+P+ + K++ a+i A+ YI +L Kaladp0034s0058.1.p 308 AKNLEVERRRRSRIKDGEFQLRALVPNiS------KMDRASIIGDAITYIIEL 354 56779********************66......*************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.5E-11	26	162	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.09E-11	303	358	No hit	No description
SuperFamily	SSF47459	2.09E-14	305	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.935	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	307	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-14	309	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-11	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	7.63E-6	412	485	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.0E-4	416	481	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MFEFGVGEME TAVREMRGLE RAVEWLRPFV EQHGWDYCVI WKSGGDPSRY VEFVDCCCAG 60 GYVSGDVKLE KSGDQNGVAS PVCRDVHVEH PIRTKACETL AQIPAALPLY SGIHSDVAIT 120 NQPNWLSEDD RTLVLIPLGG GLIELFAAKL VEKDQTTIDF IRYQYTVSLE HDALLNHLHP 180 NVDQVVHETE LGHCLQNSSP GVLFIDTAPK LQPVVPLKKP QTRASFPGSS TGSNPPNENP 240 SMDSSFGHLS QDASLPPSSS NSPCSKKPKI CENFSKSQPG AASAPGNIVF EKGNPKFGHK 300 PGKEGSKAKN LEVERRRRSR IKDGEFQLRA LVPNISKMDR ASIIGDAITY IIELKKTVQE 360 LEQELKEEDD ENVDPSVELS GKQKAGIRFK RGIPDADLRS YSEMQVEVHQ ICGRTFLLRV 420 VAEQQPCWSS RLMQAMSSLG LHVEDANINT CHGLVLCNFR VEVNSEVQPN QLRDSLIKEL 480 DTIKMN*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MFEFGVGEME TAVREMRGLE RAVEWLRPFV EQHGWDYCVI WKSGGDPSRY VEFVDCCCAG  60
GYVSGDVKLE KSGDQNGVAS PVCRDVHVEH PIRTKACETL AQIPAALPLY SGIHSDVAIT  120
NQPNWLSEDD RTLVLIPLGG GLIELFAAKL VEKDQTTIDF IRYQYTVSLE HDALLNHLHP  180
NVDQVVHETE LGHCLQNSSP GVLFIDTAPK LQPVVPLKKP QTRASFPGSS TGSNPPNENP  240
SMDSSFGHLS QDASLPPSSS NSPCSKKPKI CENFSKSQPG AASAPGNIVF EKGNPKFGHK  300
PGKEGSKAKN LEVERRRRSR IKDGEFQLRA LVPNISKMDR ASIIGDAITY IIELKKTVQE  360
LEQELKEEDD ENVDPSVELS GKQKAGIRFK RGIPDADLRS YSEMQVEVHQ ICGRTFLLRV  420
VAEQQPCWSS RLMQAMSSLG LHVEDANINT CHGLVLCNFR VEVNSEVQPN QLRDSLIKEL  480
DTIKMN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0034s0058.1.p