PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0034s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26409 Da    PI: 9.9023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0034s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1973125456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++++t+eq+  Le  F +++++  e++e+LA+klgL++rqV +WFqNrRa++k
  Kaladp0034s0004.1.p  73 KRKLTEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWK 125
                          4589************************************************9 PP
2HD-ZIP_I/II110.71e-3572161291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eqv+lLE +F +e+kLe erK++la +Lgl++rqva+WFqnrRAR+ktk+lE+dy++Lk+a+d+l+ +n +Le++v +L e+l
  Kaladp0034s0004.1.p  72 RKRKLTEEQVSLLEVNFGNEHKLEWERKERLAAKLGLDQRQVAIWFQNRRARWKTKKLEEDYSRLKAAHDNLVLHNFQLESQVIKLVERL 161
                          8*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.34267127IPR001356Homeobox domain
SMARTSM003893.3E-1670131IPR001356Homeobox domain
CDDcd000861.05E-1572128No hitNo description
PfamPF000465.4E-1673125IPR001356Homeobox domain
SuperFamilySSF466892.82E-1773135IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-1974134IPR009057Homeodomain-like
PRINTSPR000312.4E-698107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000312.4E-6107123IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MISVINNNKS EAGDDQMLSI SQMYPAAGVV YAQLETEIKQ EAAGDKKMRK RRRKKSKACR  60
GGESIREAGA LRKRKLTEEQ VSLLEVNFGN EHKLEWERKE RLAAKLGLDQ RQVAIWFQNR  120
RARWKTKKLE EDYSRLKAAH DNLVLHNFQL ESQVIKLVER LGRTENQAKR LSERSSEGTS  180
SNRPTSCLSL DAPFLGGFGI IQDGLHNNVF YMDQENYVPG AMEWPSMHDM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14553KKMRKRRRK
24852RKRRR
34854RKRRRKK
45274RKKSKACRGGESIREAGALRKRK
57075LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO232085e-54ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A314UKD24e-55A0A314UKD2_PRUYE; Homeobox-leucine zipper protein ATHB-40
STRINGXP_010531178.12e-57(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-51homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]