PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0321.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 448aa    MW: 49224.8 Da    PI: 6.5133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0321.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.21.7e-2847103259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK+vkg++f rsYYrCt+++C+vkk+vers+ +++++++   g+H+h+
  Kaladp0033s0321.1.p  47 ADGYSWRKYGQKHVKGNKFVRSYYRCTHPDCQVKKQVERSH-NGQITDTLVFGDHDHP 103
                          6****************************************.***************8 PP
2WRKY105.13.6e-33221279159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK vkg+++prsYYrC++agCpvkk+ver+++d kvv++tYeg+H+h+
  Kaladp0033s0321.1.p 221 VNDGYRWRKYGQKFVKGNPNPRSYYRCSTAGCPVKKHVERASHDAKVVITTYEGQHDHD 279
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2444104IPR003657WRKY domain
SuperFamilySSF1182901.57E-2245104IPR003657WRKY domain
SMARTSM007746.8E-3046104IPR003657WRKY domain
PfamPF031063.8E-2248103IPR003657WRKY domain
PROSITE profilePS5081119.41648105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-35208281IPR003657WRKY domain
SuperFamilySSF1182902.35E-29213281IPR003657WRKY domain
PROSITE profilePS5081135.886216281IPR003657WRKY domain
SMARTSM007743.6E-38221280IPR003657WRKY domain
PfamPF031063.0E-26222278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVATEESMRD ELVSKLEKPN SPESGILVLR SDQEGGVPLV TPEKGPADGY SWRKYGQKHV  60
KGNKFVRSYY RCTHPDCQVK KQVERSHNGQ ITDTLVFGDH DHPRTQLRLP VTVNSTMIAK  120
EGVFDMPCPV LSEEKTPVAV HQAPKPTDHK ETPMPPTVAE PDSQEHVVAQ STKTKDKLGK  180
DCTPDLKRQK KEPLHPEAAI TDKPTMDPRL VLQTVSEVDM VNDGYRWRKY GQKFVKGNPN  240
PRSYYRCSTA GCPVKKHVER ASHDAKVVIT TYEGQHDHDM PPARMMSNST SGNSTNQFLS  300
LEYNSGVRSN ESHDKCKPKD QLNRDPKIES EEAEKVGNQL GSLSSSGPES KMSDQVSGKS  360
ADNLEAVESC GVTDVAVSTN PAEGLSTDGQ EITKARASPG LAADGLKAEE DSELRNDEAI  420
KQETSEGVRR NLDHGSPTAA TLRDPHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-3648283276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015869324.11e-105WRKY transcription factor 1-like
RefseqXP_015881045.11e-104WRKY transcription factor 1
SwissprotQ93WV01e-74WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM5X4P51e-103M5X4P5_PRUPE; Uncharacterized protein
STRINGEMJ164831e-104(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-78zinc-dependent activator protein-1