PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0033s0259.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 382aa MW: 41704.1 Da PI: 6.1232 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 8e-32 | 247 | 302 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv+a++qLGG+++AtPk+i++lm v+gLt+++vkSHLQkYRl+ Kaladp0033s0259.1.p 247 KQRRCWSPELHKAFVSALQQLGGPKVATPKQIRDLMRVDGLTNDEVKSHLQKYRLH 302 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.996 | 244 | 304 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-17 | 245 | 305 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 246 | 305 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 247 | 302 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-7 | 249 | 300 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEGCEGVVAM SLGFGSTGFM PRTIAEFVAR ISSIGNVQKR LSELDEYVGC LEEEMRKIHA 60 FKRELPLCML LLSDAIGYLK EQSRRWCKWG SGGGGSEVVE KVEIDLMKES VDESQVETAA 120 GRNEDCGDKK TWMSSFQLWS CDLNAVSGCS SKLNQKVEEA RKCKLGDLFP AAESKGDNVW 180 ASMKVGADCP VTLEEKKAAQ PIVPELSLVT PGVCNLGRKL NVNGVAHRGS SSIQLSSTSV 240 HQQSCRKQRR CWSPELHKAF VSALQQLGGP KVATPKQIRD LMRVDGLTND EVKSHLQKYR 300 LHIRRVPDPN KQTDSSASQS LGLPWNKDLI QSGESSKHSK DSESGSPPGP LELDIHPPGT 360 STSGGGDNME PDEDENYCSY D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-14 | 247 | 300 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 247 | 300 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 247 | 300 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 247 | 300 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-54 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0033s0259.1.p |