PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0213.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 386aa    MW: 42535.8 Da    PI: 6.06
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0213.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09218265455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Kaladp0033s0213.1.p 218 SHSLAERVRREKISQRMRFLQDLVPGC----NKITGKAGMLDEIINYVQALQ 265
                          8**************************....999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.37E-10212269No hitNo description
SuperFamilySSF474595.5E-16212282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.085214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16214278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6218265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTSDCFGSSR NLSKSGSEMT VFERQQSQMK FLQQQHRSSA SETKYSDQVQ KIQASLEPQN  60
LTKVESGLLS PMMTTDPCLG WPELGHLSMP KRMLHSSSDY VHDQYTQEMS TLTTALSTGV  120
PYRTAMLEKE GDDSVVKESP KIRETDQWLT PKFAAESIAN EERIEKCIAE EDLNITLQSV  180
PKKGRTSIGT SKENPNTSEV TKPEYIHVRA RRGQATDSHS LAERVRREKI SQRMRFLQDL  240
VPGCNKITGK AGMLDEIINY VQALQRQVEF LSMKLAAVTA AQDYCNDPAL SYHIVSMPDA  300
PSNACLPFNQ LKASNVSAAA MTIAPASGHN SLLATAGFAA LTTWDADFQA APGIEFHQRR  360
STSFSSQPNE GDTSGMSTLS LCFDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-47cryptochrome-interacting basic-helix-loop-helix 1