PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0033s0181.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 802aa MW: 88254.9 Da PI: 9.0077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0033s0181.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.4e-06	116	135	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+f G C++G++C+F H+ Kaladp0033s0181.2.p 116 CRDFTS-GRCRRGSNCPFLHS 135 777777.*************8 PP
2	zf-CCCH	19.3	2e-06	207	227	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ffa+ G C+ G +C+F+H Kaladp0033s0181.2.p 207 PCTFFAA-GNCRNGKSCRFSHH 227 7999999.*************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0019	110	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.521	110	137	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-5	112	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	115	135	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	202	228	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.286	202	229	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-5	205	227	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MAENDVKYPT DTKDVRSKYE VATSVREHAS GNRGTWRDNS LDRGNRGFSE AGTDWDEDGG 60 RRDFVRSPRS SWKRPLRSTS RGRSRSRSRS PIRAYRLESG VDARPRSKAE VPIQTCRDFT 120 SGRCRRGSNC PFLHSSTHNY EDRRYDFEHR EESVRGGKYS QFNASDGCYN DYNKETSEPK 180 REYDRNSRGT SFNHGGDRDP RRSADIPCTF FAAGNCRNGK SCRFSHHISS SSSSGGRTHD 240 GRWRTNHSPE KAGQMDRGTK FSDHVDTHTD YGKEGRSRTN RSPDRVDQGV KSSETADPNL 300 VEYGKESHGK VVSPQPRSIS SSMNSRWGNN IETSYVPPGG PTIMDKVVEV EANQSSQWKT 360 ENPGSLTRAS EMKGVDNWIG DKMSPEWNPK VSSVRTVAVE EPAYAIQTSE SVNHNVPPQA 420 SQLTHYVSSV TPDVLEKPNF QQGFNSINDA PTALSYDRNT GSNVVMNFNS SFLSSNSAQP 480 GSHSGPNEAP GNLNALGQGQ FSLTTSHPGN ENASAIRNST ANYDMYSITS NCEDPKVSEA 540 ISGATPASNM VSQAQLAQLT DLSASLAHLL GKGQQLPQFY AALNPPNPVA SLEISNGIVS 600 QFPVESVLPH PHIGSDKPYG PVCDNALQIQ PNISTMPTQY PLNPGVVRTM EDVKQEVPSR 660 ELNAGEAYKN GHAEGNLSQK PDTDSKSNKK PKSMLDESSK GKDKHAKPRE GSPLENMDGV 720 GKGDGGKKVK DTKALRDFKH GLVNFVKELL KPAWKDGQID KEGFKTIVKK VTDKVTATIQ 780 EANIPQTPEK AYVDRHHKKQ T*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MAENDVKYPT DTKDVRSKYE VATSVREHAS GNRGTWRDNS LDRGNRGFSE AGTDWDEDGG  60
RRDFVRSPRS SWKRPLRSTS RGRSRSRSRS PIRAYRLESG VDARPRSKAE VPIQTCRDFT  120
SGRCRRGSNC PFLHSSTHNY EDRRYDFEHR EESVRGGKYS QFNASDGCYN DYNKETSEPK  180
REYDRNSRGT SFNHGGDRDP RRSADIPCTF FAAGNCRNGK SCRFSHHISS SSSSGGRTHD  240
GRWRTNHSPE KAGQMDRGTK FSDHVDTHTD YGKEGRSRTN RSPDRVDQGV KSSETADPNL  300
VEYGKESHGK VVSPQPRSIS SSMNSRWGNN IETSYVPPGG PTIMDKVVEV EANQSSQWKT  360
ENPGSLTRAS EMKGVDNWIG DKMSPEWNPK VSSVRTVAVE EPAYAIQTSE SVNHNVPPQA  420
SQLTHYVSSV TPDVLEKPNF QQGFNSINDA PTALSYDRNT GSNVVMNFNS SFLSSNSAQP  480
GSHSGPNEAP GNLNALGQGQ FSLTTSHPGN ENASAIRNST ANYDMYSITS NCEDPKVSEA  540
ISGATPASNM VSQAQLAQLT DLSASLAHLL GKGQQLPQFY AALNPPNPVA SLEISNGIVS  600
QFPVESVLPH PHIGSDKPYG PVCDNALQIQ PNISTMPTQY PLNPGVVRTM EDVKQEVPSR  660
ELNAGEAYKN GHAEGNLSQK PDTDSKSNKK PKSMLDESSK GKDKHAKPRE GSPLENMDGV  720
GKGDGGKKVK DTKALRDFKH GLVNFVKELL KPAWKDGQID KEGFKTIVKK VTDKVTATIQ  780
EANIPQTPEK AYVDRHHKKQ T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RGRSRSRSR

Link Out ? help Back to Top
Phytozome	Kaladp0033s0181.2.p