PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0404.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 1670aa    MW: 181419 Da    PI: 4.7791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0404.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.5e-0616441667327
                           S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                           t+ C++++  G Ck G++C+  H++
  Kaladp0032s0404.1.p 1644 TRVCDYYMS-GRCKKGASCNWLHPQ 1667
                           899**7777.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.6E-10447515IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.54E-8457513IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.609459525IPR019787Zinc finger, PHD-finger
CDDcd155686.15E-22461506No hitNo description
SMARTSM002491.2E-7461507IPR001965Zinc finger, PHD-type
PROSITE patternPS013590462522IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.107.0E-25707790IPR003121SWIB/MDM2 domain
SuperFamilySSF475926.1E-21707783IPR003121SWIB/MDM2 domain
PfamPF022011.9E-15709782IPR003121SWIB/MDM2 domain
SMARTSM001511.7E-4716787IPR019835SWIB domain
SMARTSM007191.7E-41842952IPR004343Plus-3 domain
PROSITE profilePS5136026.158842975IPR004343Plus-3 domain
SuperFamilySSF1590426.15E-32843973IPR004343Plus-3 domain
PfamPF031263.5E-22848950IPR004343Plus-3 domain
SuperFamilySSF552772.88E-1711701228IPR003169GYF domain
PROSITE profilePS5082915.38211761230IPR003169GYF domain
CDDcd000721.13E-1411761220No hitNo description
SMARTSM004441.9E-1711771232IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.0E-1611781229IPR003169GYF domain
PfamPF022132.3E-1311781224IPR003169GYF domain
PROSITE profilePS5010313.66616411668IPR000571Zinc finger, CCCH-type
SMARTSM003560.009616431667IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.38E-516441666IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-416441667IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1670 aa     Download sequence    Send to blast
MADDDEVAAG DHSPRRFQEA QGPAPEQLTN QERRPVSEEI VVEELEAVAG SEVSEFGGSE  60
VPAELGAVCA ADGQAGAEIG GSVGKDEAAV ESNESGVAME VEPCNAGEGG VGSNCCPSEL  120
EGAEPEKYDQ AEDVKSTAFG IGTESQNEPD SEKLHLDVKS EGVVAAEDYH MNDAFEEKTE  180
ESEKNVSVEQ CEASTVCGGM EQVDDSKKTV KEEGVEENVA GISDLIGGDP TGDVGYEHKG  240
ELPVAVPEIV IGEQETTLLS TSRPIVESEQ VALAEDDLME DASTSSDEDN GDHHVTELVE  300
DIVHSELMND QESPSSREVN SVDSAAQGKV DDILSVAEQQ KHVALSVGLD HIDQSDKPKD  360
EGGDEDAEMR TEEENIENEE KVKEDLSAVP DLDFSLQNVE LDPTIGEDEI DEEFVGGEDP  420
SIADEVETQI DITDAEKGNA PRKRGRKPVK AASTKKTEED VCFICFDGGD LVVCDRRGCP  480
KVYHPSCVNR DEAFFRSKGR WNCGWHLCSI CEKNAQYMCF TCTFSLCKAC IKSTVFYSVR  540
GNKGFCDNCM KTVNLIESNE QGNNEAKFDF DDKNCWEYLF KDYWIDVKGK LQLTSEELAQ  600
AKNPLKGSEA VTSKQESADE TYNIDNNADS GSNNSSGNAV ASTPKKKKSK KRSKSVGKGE  660
DSASGSDSSG NGNKSKRKKT KKQVKSLRKR GSSGNTSEVG IDSGSKWASS ELLKFVMHMR  720
NGDASVLSQF EVQELLLEYI KTNKLRDPRR KSQIICDAML KGLFRKQRVG HFEMLKLLEL  780
HFLMREDQQN DFHGSSVDNE SSPLDETRKA DVSAKTSKDK KRKMHKKRFG RGTPTNIEDY  840
AAIDIHNVSL VFLRRNLMEI LLEDVEKFQE KVVGAFVRIR ITGINQIQDM YRLVQIVGTT  900
KAPVPYKVGK RTTDINLEIQ NLNKKEVVSM DIISNQEFTE DECNRLRQSI KCGLIPPLTV  960
GYILEKAMDL QAARVNDWLE TEMVRLSHLC DRASDMGRRK ELRENVEKLQ NLKKPEERQR  1020
RLEQIPEVHS DPKMDPSYES EEDEVEAEDR KQENFSRPMG SSFSRQGKET LSPRKGSSVS  1080
SDSWSGAKGH SVSGMNRELG RSLSVKGEDT SLTGELNRDI MSLKRSNEHE SITRDRQKGP  1140
YSSPLVGGNS YSAVASEPVS GVVSDTQTAA TVNESEKIWH YKDPSGKVQG PFSLVQLKKW  1200
NTTGFFPKDL TIWRTSENED DGILLLDALA GKFQKETKFN ENQSNKSHNV QIGHSSLPHS  1260
ARSALNGSMG NSASPSQIST VGRTSLSVDV PMANAAARGS GFDSRNDSTN LPSPTPNQTP  1320
KGSTEGQAFV DRVSSFSRSA IGSLSADSTQ LDRLTATSVA NAFRSTYNQQ PTSTGYHLQQ  1380
PDPSAASVNS GVESRNSAAA VPSIMQSVAL QQPGHSGSNN QIPFSASNTY NQWGNPTAVS  1440
TENPGGSFPN QGFLGMPVST AWRPPTLPVN QPGAQAVVLP DQSWRAVPGN PNMGWGGVLQ  1500
ANANVSWTPT GQVAPQVNPN WAVQGMGPVT GSATAGWMAA QGHATPGFVA PGNNQAGAIM  1560
NPSWAGGAVV NANSNQAWAA AGHGSMPNSA APNNNSQGSW VNGQNGSERY ANDRTGGGSS  1620
GRQWNNRRGE GSYHQRGGSG AGPTRVCDYY MSGRCKKGAS CNWLHPQRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A3e-17459538682Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021661144.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A067JUK40.0A0A067JUK4_JATCU; Uncharacterized protein
STRINGGLYMA06G01070.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-174nucleic acid binding;zinc ion binding;DNA binding