PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0029s0094.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 21876.2 Da PI: 10.5746 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.1e-05 | 72 | 92 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Kaladp0029s0094.1.p 72 CEVCNKGFQRDQNLQLHRRGH 92 *******************88 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + ks+ k H + + Kaladp0029s0094.1.p 147 WKCDKCSKKYAVKSDWKAHSKIC 169 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.47E-8 | 69 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-6 | 69 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.13 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.47E-8 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSQGLSPVPS SILGFVGDQS KNPDSSNSPA TQPSASSSTL KRKRSLPGTP DPDSEVIALS 60 PTSLMATNRF LCEVCNKGFQ RDQNLQLHRR GHNLPWKLKQ RSNKEVVKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVKS DWKAHSKICG KERNDTECML 180 RLCLAKKQFS RKEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077620.1 | 2e-92 | zinc finger protein BALDIBIS-like | ||||
Swissprot | Q944L3 | 7e-86 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | A0A1S3Y4A7 | 5e-91 | A0A1S3Y4A7_TOBAC; protein indeterminate-domain 9-like | ||||
TrEMBL | A0A1U7W1Z7 | 5e-91 | A0A1U7W1Z7_NICSY; zinc finger protein JACKDAW-like | ||||
STRING | XP_009771226.1 | 9e-92 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 3e-76 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0029s0094.1.p |
Publications ? help Back to Top | |||
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