PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0029s0084.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1027aa    MW: 113501 Da    PI: 4.9275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0029s0084.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-183985148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Kaladp0029s0084.1.p 39 KGQWTAEEDEILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                         799****************************9.************986 PP
2Myb_DNA-binding62.11.2e-1991137148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W+++Ede +v++v+q+G + W+tIa++++ gR +kqc++rw+++l
  Kaladp0029s0084.1.p  91 KGPWSKQEDEVIVQLVNQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                          79******************************.*************97 PP
3Myb_DNA-binding46.49.1e-15143185145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r++WT+ E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Kaladp0029s0084.1.p 143 RDAWTQKEELALIQAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 185
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1753485IPR017930Myb domain
SuperFamilySSF466897.11E-183799IPR009057Homeodomain-like
SMARTSM007176.4E-153887IPR001005SANT/Myb domain
PfamPF002491.9E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-224098IPR009057Homeodomain-like
CDDcd001671.42E-134285No hitNo description
PROSITE profilePS5129431.04586141IPR017930Myb domain
SuperFamilySSF466891.76E-3088184IPR009057Homeodomain-like
SMARTSM007176.4E-1890139IPR001005SANT/Myb domain
PfamPF002492.5E-1791137IPR001005SANT/Myb domain
CDDcd001671.75E-1593137No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2699144IPR009057Homeodomain-like
PROSITE profilePS5129418.303142192IPR017930Myb domain
SMARTSM007175.4E-14142190IPR001005SANT/Myb domain
PfamPF002499.2E-13143186IPR001005SANT/Myb domain
CDDcd001671.11E-10145185No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20145192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MDSDHRTMTH ASQNGADDRR LKVRPPHGRT TGPTRRSTKG QWTAEEDEIL SKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKQEDE VIVQLVNQYG AKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPT INRDAWTQKE ELALIQAHQI YGNKWAELTK FLPGRTDNAI  180
KNHWNSSVKK KMESYIASGL LSQLQCLPLD GQNLSMSSPA SRMQQSSGDE SNLKEGNDVE  240
DISECSQGST APGCSLNASD MNNRILHARS EFMHTNCSGQ MKQERCSPQS SEAYFASIEE  300
VNMSIPEIVV NCSLLDRNSS HTSGGLLAND DYNLQEFPGM SLLELGQDQP YGPTANGSNE  360
MLHLPYYNSS LVTASISSGN TVIEPEKTEK FLVSESTSCL PISIPSNAGA DGCGVCHSLS  420
FSNAVEMDGC EDSLILQASN LQIQDSMGTS ASHSTFMRSE VEENSCFQAP SSGPPYLNFH  480
DNKLSYGCGP SQVDHFPPGT QEQDLAGSPC NEFMLTEDFT EPLCNGGTES TDLHGHLNYQ  540
QYTDHLPDEP IERLDECTHI IDELPTAKIE GREQDNGSLF YEPPRFPSLD VPFFSCDLVQ  600
SSNDLQQEYS PLGIRQLMMS SVNCLTPFRL WDSPTRENSP DALLKSAAKT FSGTPSILKK  660
RHRDLLSPLS DRRKDKRLDS DSKQKSFSSL ARDFSNLDAM FEETATCSTA TQKRDSGEFS  720
DDKENVDPAV MRQKEVERGG SGSEKESSFC RTEENKSSNY GLDQESQHDA GVDGHVQKSS  780
ENLADNDLEN ILIFSPDQVG LEADKVFVPS AWANPPSSGS RHTPSSINSP SVNWSRSHVI  840
GSSSKCMTPS CLEIAVSNAG LEMGIEIGNM FGGTPFKISF ESPSAWKSPW FMNSFLPGPR  900
VDTDITIEDI GYFLSPGERS CDALGLMEQL SERSAAAIAE AHEMLGNETP KAILRETHAK  960
SANAGHPDTS DNQPGSLSRF APDMLPERQV LDFSECETPN KEKEVRRAFP SVKLLSPSSY  1020
LVKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-67391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-67391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1670677DRRKDKRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618556.10.0transcription factor MYB3R-1
TrEMBLA0A2C9VK700.0A0A2C9VK70_MANES; Uncharacterized protein
STRINGEOY296790.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein