PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0029s0020.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 672aa    MW: 76029.4 Da    PI: 6.4074
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0029s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.84.8e-23202255155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+ Wt +LH++Fv+av+   G ek  Pk+il+ m+v+ Lt+e+v+SHLQkYRl
  Kaladp0029s0020.1.p 202 KARVIWTVDLHQKFVNAVNLV-GLEKIGPKKILDSMNVPWLTRENVASHLQKYRL 255
                          68*****************99.********************************8 PP
2Response_reg75.42.1e-25221301109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++l+++l+k  y ev+++  ++eal +l++++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  Kaladp0029s0020.1.p  22 VLVVDDDLTWLKILEKMLKKCFY-EVTTCCLAREALSILRQRKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMK 109
                          89*********************.***************888889**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el++
  Kaladp0029s0020.1.p 110 GVQHGACDYLLKPIRMKELRN 130
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.2E-1351632IPR017053Response regulator B-type, plant
SuperFamilySSF521729.11E-3519145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-4219144No hitNo description
SMARTSM004484.7E-3120132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.78721136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2222131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-2823136No hitNo description
SuperFamilySSF466895.38E-16200259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-25201260IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-21202255IPR006447Myb domain, plants
PfamPF002496.8E-6207254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MMMEKSAFAS PQTDAFPAGP RVLVVDDDLT WLKILEKMLK KCFYEVTTCC LAREALSILR  60
QRKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPIRMKELRN IWQHVFRKRI HEVRDAENHE GFEAIQMVRI GCEQSDLEYY LSGGHDLSAT  180
RKRKDAVHKH NDRELGDAFA KKARVIWTVD LHQKFVNAVN LVGLEKIGPK KILDSMNVPW  240
LTRENVASHL QKYRLYLSRL HKYNGDEALE MANHLDLDFC RVKHSDVLTK DSKEISFSTE  300
EPITEKHINS SSGASSSNSY YWGDHKIQDT KFRNFTLPDL KVEPIFGLNA DDPESQSMKY  360
SWPDASHRLE TVESDAQFAN SDPNITSKYS RSGEIRDIHY ELVNKQKQWL DDGFNSWSLP  420
NRQYHPQPNQ RNSLLSANTG SSHWEKEITS LSVEPHHLKP SLSAHVVKIL SEGETSVENN  480
PPSVEQGFHH DHVKGKAPLE HKFDTGFKAA HTSSLQTPVS HLLASPSVYL GTSNRETHTS  540
SSVKNKPPQS EQVTNSDRDT TSLETGSPML RAPTVGSFIA SQRFEYAESE LALVAFGKDY  600
KVNGDHGEYT SSNSYDFLPI TKPDIQANVP LHLYDAMRFD FCYEAAGFPM IDQSLSIVDT  660
AHFTSSYYPV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16201260463ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061797.11e-153two-component response regulator ORR26-like isoform X2
TrEMBLA0A2R6RED21e-150A0A2R6RED2_ACTCH; Two-component response regulator like
STRINGXP_002515016.11e-150(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11