PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0028s0006.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 689aa MW: 75755.8 Da PI: 6.8018

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0028s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	487	524	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Kaladp0028s0006.1.p 487 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 524 664559******************************88 PP
2	BELL	122.8	1.4e-39	347	418	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q+kk+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkdaia q+ Kaladp0028s0006.1.p 347 ERVEHQRKKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAIAAQL 418 688******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.6E-69	263	416	IPR006563	POX domain
Pfam	PF07526	3.6E-52	268	415	IPR006563	POX domain
PROSITE profile	PS50071	12.503	465	528	IPR001356	Homeobox domain
CDD	cd00086	2.34E-12	468	529	No hit	No description
SMART	SM00389	1.2E-9	468	532	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-17	469	535	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-29	471	534	IPR009057	Homeodomain-like
Pfam	PF05920	3.4E-18	485	524	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGGGFPAP DENSGTGIPT VYETAGMLSE 60 MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH 120 HQQQQHHQRQ HHQQHQMTAI SVADSAAAAM QLFIMNPQSR SSTSPGQASA PPHSNTLHML 180 LPNNPNSGEF DTWGGGGGGG EAQGLSLSLA SSLEAAKAEQ FFFTQNHHHQ QLQQQQQTLH 240 FNHQMNNGLF VGPSTSSPSS SSLTAMNMLR NSKYAKPTQE LLEEFCSVGR GHFKKTKFRN 300 NNNNANPNNP DQTPPPEAAG SGGAGGASSS STKEGLTAPT PPLSAAERVE HQRKKVKLLA 360 MLDEVDRRYN HYCEQMQMVV NSFDLVMGFG SAVPYTALAQ KAMSRHFRCL KDAIAAQLKH 420 SCELLGEKDP AAGGGVTKGE TPRLRILEQS LRQQRAFHQM GMMETEAWRP QRGLPERSVN 480 ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQEAKE 540 EEASVNPDNN NKNSNEDMND QDDLLDPSPR QNDPAPTHHY TSASEQHHTG ASSRFSVIPQ 600 QGPNMVMSAA AAAPQGYYHQ RFHVEMMGAD DPRRRDIGGS SAGTSGGFIG GGPGLIRFGT 660 TTTAGDVSLT LGLRQHSGNL PEKNSFFG*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGGGFPAP DENSGTGIPT VYETAGMLSE  60
MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH  120
HQQQQHHQRQ HHQQHQMTAI SVADSAAAAM QLFIMNPQSR SSTSPGQASA PPHSNTLHML  180
LPNNPNSGEF DTWGGGGGGG EAQGLSLSLA SSLEAAKAEQ FFFTQNHHHQ QLQQQQQTLH  240
FNHQMNNGLF VGPSTSSPSS SSLTAMNMLR NSKYAKPTQE LLEEFCSVGR GHFKKTKFRN  300
NNNNANPNNP DQTPPPEAAG SGGAGGASSS STKEGLTAPT PPLSAAERVE HQRKKVKLLA  360
MLDEVDRRYN HYCEQMQMVV NSFDLVMGFG SAVPYTALAQ KAMSRHFRCL KDAIAAQLKH  420
SCELLGEKDP AAGGGVTKGE TPRLRILEQS LRQQRAFHQM GMMETEAWRP QRGLPERSVN  480
ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQEAKE  540
EEASVNPDNN NKNSNEDMND QDDLLDPSPR QNDPAPTHHY TSASEQHHTG ASSRFSVIPQ  600
QGPNMVMSAA AAAPQGYYHQ RFHVEMMGAD DPRRRDIGGS SAGTSGGFIG GGPGLIRFGT  660
TTTAGDVSLT LGLRQHSGNL PEKNSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	474	532	5	63	Homeobox protein Meis2
3k2a_B	2e-16	474	532	5	63	Homeobox protein Meis2
4xrm_A	2e-16	474	532	5	63	Homeobox protein Meis2
4xrm_B	2e-16	474	532	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079108.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_012079109.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-151	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A067KJ17	0.0	A0A067KJ17_JATCU; Uncharacterized protein
STRING	cassava4.1_001790m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-132	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Kaladp0028s0006.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]