PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0026s0146.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17378 Da PI: 7.8276 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.6 | 2.7e-35 | 1 | 90 | 2 | 91 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 CaaCk lrrkC++dC+lapyfp+ +p++fa vh +FGa+n+ k+l+++p + r +a++++++eA +r+ dPvyG++g+i+klqqq++q++ Kaladp0026s0146.1.p 1 CAACKCLRRKCPADCILAPYFPSWNPQRFAPVHNVFGAANMAKMLEQVPAHLRGQAADCMIFEAAMRMIDPVYGSAGIISKLQQQIKQMQ 90 ***************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.365 | 1 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-35 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
CAACKCLRRK CPADCILAPY FPSWNPQRFA PVHNVFGAAN MAKMLEQVPA HLRGQAADCM 60 IFEAAMRMID PVYGSAGIIS KLQQQIKQMQ IMKIQGEVAL HQAQTILHLQ QLGDKSNTDP 120 GASRRADADS NNGQHYELDL DEFYVNFISS LNPKPF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-29 | 1 | 90 | 12 | 101 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-29 | 1 | 90 | 12 | 101 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892504.1 | 2e-44 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 7e-34 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A1U8B9X8 | 3e-39 | A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like | ||||
TrEMBL | A0A2R6QBX8 | 4e-39 | A0A2R6QBX8_ACTCH; LOB domain-containing protein | ||||
STRING | Lus10023434 | 6e-41 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-32 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0026s0146.1.p |