PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0026s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23804.2 Da PI: 8.4972 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.9 | 4.4e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C++ p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA r+ +P+yG vg+++++++ Kaladp0026s0083.1.p 4 SCNGCRVLRKGCTDSCTIKPCLqwiktPEAQANATLFLAKFYGRAGLLNLIDAAPPHLRPAVFRSLLYEASGRILNPIYGPVGLLWSGSW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 ql+q++++ +l ++ Kaladp0026s0083.1.p 94 QLCQAAVDCVLNGS 107 ******99887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.049 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCTDSCT IKPCLQWIKT PEAQANATLF LAKFYGRAGL LNLIDAAPPH 60 LRPAVFRSLL YEASGRILNP IYGPVGLLWS GSWQLCQAAV DCVLNGSPIT PINSEAAETP 120 QGPPLKTCDI RHVSKDLHKV KSRCRFKRSD SKQAVVNKID RRPEPEKNRS ASHDSTVSHP 180 AQPVWHFEEP SRDSESVLSG ETDAAVAGFD LELSLGI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027077434.1 | 5e-96 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027077531.1 | 5e-96 | LOB domain-containing protein 41-like | ||||
Refseq | XP_027179837.1 | 6e-96 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 4e-80 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A218VVC6 | 1e-95 | A0A218VVC6_PUNGR; Uncharacterized protein | ||||
TrEMBL | A0A2I0L4R4 | 1e-95 | A0A2I0L4R4_PUNGR; Uncharacterized protein | ||||
STRING | VIT_14s0006g02950.t01 | 5e-94 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-82 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0026s0083.1.p |