PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0856.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 26693.6 Da PI: 6.6566 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.1 | 1.1e-11 | 6 | 26 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 lCr+++r G C+yG+rCkFaH Kaladp0024s0856.1.p 6 QLCRYYQR-GSCQYGARCKFAH 26 69******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 17.356 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 5 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-9 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQPSKQLCRY YQRGSCQYGA RCKFAHEIEQ PSKANNSFGF GVQQNSGSVQ QQNNPFGFGP 60 FDNKWSRVSA NPGTGAAASP RKGDGQSPAA THSCTDPDSC KKQIAEDFEH ERPLWKLTCY 120 SHHKYAPCDI TGDVSYEELR MSAYDDAKSG MSLPAIVEKE RGLLNAKLVE FEALLRNPYK 180 GPSSSIATQS PFPQATPNAF MNNVASPSVT IYNTWGVYGF TENLVENEKE FFIWFGENWG 240 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473927.1 | 9e-76 | zinc finger CCCH domain-containing protein 16 isoform X4 | ||||
Refseq | XP_021689229.1 | 1e-75 | zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Refseq | XP_021689230.1 | 1e-75 | zinc finger CCCH domain-containing protein 16 isoform X2 | ||||
Refseq | XP_028060199.1 | 1e-75 | zinc finger CCCH domain-containing protein 46-like | ||||
Swissprot | Q9FWS3 | 7e-65 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A061GRV6 | 5e-75 | A0A061GRV6_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5 | ||||
TrEMBL | A0A061GSU7 | 6e-75 | A0A061GSU7_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment) | ||||
STRING | XP_006473927.1 | 4e-75 | (Citrus sinensis) | ||||
STRING | EOY32212 | 7e-75 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 7e-65 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0856.1.p |