PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0849.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 1104aa    MW: 121681 Da    PI: 6.4788
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0849.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22152253199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Kaladp0024s0849.3.p 152 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLTGDSVLFI 239
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++ +r+
  Kaladp0024s0849.3.p 240 --RDEKQQLLLGTRRA 253
                          ..55788889999886 PP
2Auxin_resp116.62.1e-38278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+aa+++s+F+v+YnPr+s+seFv++++k+ ka++  ++s+GmRf+m fete+s +rr++Gt++g+sd+dpv+W+nS+Wr+L+
  Kaladp0024s0849.3.p 278 AANAAANNSIFTVFYNPRTSPSEFVIPLAKYYKAVNsYQISLGMRFRMTFETEESGTRRYMGTITGISDVDPVNWKNSQWRNLQ 361
                          799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-39143267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-42143279IPR015300DNA-binding pseudobarrel domain
CDDcd100175.97E-20151243No hitNo description
PfamPF023627.0E-21152253IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787152254IPR003340B3 DNA binding domain
SMARTSM010193.7E-22152254IPR003340B3 DNA binding domain
PfamPF065072.9E-34278361IPR010525Auxin response factor
PROSITE profilePS5174528.1759911076IPR000270PB1 domain
PfamPF023091.5E-79911076IPR033389AUX/IAA domain
SuperFamilySSF542773.07E-810031070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MSATMAPASA VADAETPPAE AVVRCQVCHG NLLLEVMSLD ANKTINPELW QACAGPLVNL  60
PMAGTHVVYF PQGHSEQVAV SMKKDVDAQY PNYSNLPPKL ICLLHSVTLL ANPDTDEVYA  120
QMVLQPVSSI DQEALIGSDH SLKSHKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP  180
LDFSMQPPAQ EIVAKDLHDN VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL LTGDSVLFIR  240
DEKQQLLLGT RRANRLPPNV SSSVISSDSM HIGILAAAAN AAANNSIFTV FYNPRTSPSE  300
FVIPLAKYYK AVNSYQISLG MRFRMTFETE ESGTRRYMGT ITGISDVDPV NWKNSQWRNL  360
QVGWDEENTG EKCHRVSIWD IEPVTAPYFI CPPPFIRFKR PRQIGMPDEE SSDMENLFKR  420
VMPWLHDNAF LKESRPIPGI NFTQWMNMQQ NHLLTHSLQS AYMPSIPGCV LPSLAEADPS  480
QHVGLSASHY PPQSNPQLGI QWPQQQLHQL PKPSPLNPCS TSHQHLPDLT QQSQNSVSQL  540
PASSHYMLPQ TQVKITDILQ KQLASQNAQA QGSIPQISNQ QQLLSTSHNL GQLPEIVNQP  600
VTNNLIQLPM LQRGHQQEQQ YLHSQQSITQ HVGQIASFQG QQRPTADVAN NIYIPASIGS  660
VQAVEMPQVM TSSTYPCTMD PTQQQCGNNT GLSTGCISSS PQQLRSVHQP LAVNISELPF  720
PTGCHTSNVN QVSVDGTTIW TGAGQLLCAN GVPSCSTSTL NEKFPNAIKS VKGMIQKSYI  780
QGPEDMTPPA FILPVTGAIE SASSSNSFVR CSENKSAVLT ELCNGKKQNA GVANNFMIVN  840
SVQPQKNYLD TSYSSTSVSQ FENNASLQQN VNPASFSFQP MMSQTAVGFV DHRNNISFEM  900
SSGQNITSLN QDPLLSQDIV SLGKNKSASE DMLHDFEYAK DPQQELSSSI VSQSFGVPDM  960
TFNSIESTLS DNSFIAKPPF APPPQPYQRL RTYTKVYKRG AVGRSIDITA YSGYDDLKQD  1020
LARRFGIEGQ LEDRHKVRWK LVYVDHENDV LLVGDDPWEE FVSCVRSIKI LSPQEVQQMS  1080
LDGDVSNSVL LKQACSSSNG GIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1553338233388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
TrEMBLA0A2N9GCT50.0A0A2N9GCT5_FAGSY; Auxin response factor
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein