PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0246.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 394aa MW: 44146.9 Da PI: 8.8011

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0246.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.4e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++++lm++ gLtl+h+kSHLQkYRl Kaladp0024s0246.1.p 47 KPRLKWTPDLHERFIEAVHQLGGPDKATPKSVMKLMGISGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.985	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-31	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-24	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-11	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-24	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MYHHHQNHGK NFHSSSRIPI PPERHLFLQP GANGPGDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVHQLGGP DKATPKSVMK LMGISGLTLY HLKSHLQKYR LSKNLHGQPN GSTHKLVTAA 120 ASQKIPEATE TTVSSPSTGS QSNKLQISET LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSVLEKAQ ETLGRQNLGT VGLEAAKAQI NDLVSKVSTQ CLNSPFSVNK GELHALCTQH 240 LQMTQQANGS LDSCLTNGSH NRHSVGFEMM QCKQNWHNDH RMILPSFAGD TERQVLLMED 300 SPSGLSMGIG LHQEKRDKRS TYPEPKIRKQ DDADELLFKR PSNKNQSLNM ENERLSLGCR 360 MPSMEPKLDL NSHEEHDASR GCKQFDLNGF SWN*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MYHHHQNHGK NFHSSSRIPI PPERHLFLQP GANGPGDSGL VLSTDAKPRL KWTPDLHERF  60
IEAVHQLGGP DKATPKSVMK LMGISGLTLY HLKSHLQKYR LSKNLHGQPN GSTHKLVTAA  120
ASQKIPEATE TTVSSPSTGS QSNKLQISET LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ETLGRQNLGT VGLEAAKAQI NDLVSKVSTQ CLNSPFSVNK GELHALCTQH  240
LQMTQQANGS LDSCLTNGSH NRHSVGFEMM QCKQNWHNDH RMILPSFAGD TERQVLLMED  300
SPSGLSMGIG LHQEKRDKRS TYPEPKIRKQ DDADELLFKR PSNKNQSLNM ENERLSLGCR  360
MPSMEPKLDL NSHEEHDASR GCKQFDLNGF SWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	46	103	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021901042.1	1e-162	LOW QUALITY PROTEIN: myb-related protein 2-like
Swissprot	Q9SQQ9	1e-118	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2P2LI15	1e-157	A0A2P2LI15_RHIMU; Myb family transcription factor family protein
STRING	POPTR_0013s05670.1	1e-155	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-121	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0024s0246.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]