PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0023s0090.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 357aa MW: 39641.8 Da PI: 4.5176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0023s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	183	226	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL +++Y+k+L Kaladp0023s0090.1.p 183 LMAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILADTIDYMKEL 226 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.326	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	181	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-12	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.05E-5	184	226	No hit	No description
Pfam	PF00010	1.1E-8	184	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-16	184	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MELSQSFLLE ELLGLRRENC STYQTGVAMD EFYTDGWSCD FIDESQVLAA SADAGMATAA 60 GFAMPQMEPY FDLPFSEVYN SLDASFTAPV TTVADQFSLA YEINNGTTLL PPIHDQYTSM 120 VDEEFTFLSN GVQHVGEDKY ASGCKVEMVL SPGENLGSYK SLGGGKERRN GVKKVGGQPS 180 KNLMAERRRR KRLNDRLSML RSIVPRISKM DRTSILADTI DYMKELLEKV SKLEEEEKEH 240 TEAGPINKLK ELKSSEGQAK NSPKFDVKMG EKDTRIDICC STRPGLLIST VNTLETLGLE 300 IQQCVISCFN DFSMQAACSQ VAEEPMELTT EEIKQALFRN AGYEGRCLKE SSQEMS*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MELSQSFLLE ELLGLRRENC STYQTGVAMD EFYTDGWSCD FIDESQVLAA SADAGMATAA  60
GFAMPQMEPY FDLPFSEVYN SLDASFTAPV TTVADQFSLA YEINNGTTLL PPIHDQYTSM  120
VDEEFTFLSN GVQHVGEDKY ASGCKVEMVL SPGENLGSYK SLGGGKERRN GVKKVGGQPS  180
KNLMAERRRR KRLNDRLSML RSIVPRISKM DRTSILADTI DYMKELLEKV SKLEEEEKEH  240
TEAGPINKLK ELKSSEGQAK NSPKFDVKMG EKDTRIDICC STRPGLLIST VNTLETLGLE  300
IQQCVISCFN DFSMQAACSQ VAEEPMELTT EEIKQALFRN AGYEGRCLKE SSQEMS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	192	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264407.1	1e-113	PREDICTED: transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	1e-75	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A060A490	1e-111	A0A060A490_VITRI; Inducer of CBF expression 4
TrEMBL	A0A438FBI2	1e-111	A0A438FBI2_VITVI; Transcription factor bHLH93
STRING	VIT_00s1312g00010.t01	1e-112	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-67	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Kaladp0023s0090.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]