PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0023s0071.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 446aa MW: 48175.9 Da PI: 8.9115 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.1 | 3.1e-23 | 82 | 126 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e Kaladp0023s0071.2.p 82 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 126 79****************************************986 PP | |||||||
2 | QLQ | 51.7 | 2.7e-18 | 11 | 46 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k Kaladp0023s0071.2.p 11 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 46 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.6E-10 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.477 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.0E-13 | 12 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.911 | 82 | 126 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-19 | 83 | 125 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MHAPFAGARQ LFTQNQWFEL EQQALIYKYI AANVSVPSNL IIPIKKSFNP WGLPGSISPN 60 GSLSSSSFGW GPFHLGFHGS TDPEPGRCRR TDGKKWRCAK DAVHGHKYCE KHLNRGRHRS 120 RKPVEGQKPD QSVAGAANFA NKVAPMASSL SKASVMPGGR SANGLAAKGA HSTLNPFTDL 180 ITKRTQDLQG ISMLSPAISL GSKDASFAIP KPKDPFEESY QSEFGFVSSD YLQNPYQKIS 240 SCLNSSFVDF SDQDSRDQHP LRQFMEDWPK ERSEHSSLTW QDETKPDWTK LSMAIPVVSS 300 GLSSSASSPT HERLALSPLR LGLEFHQNEM GANEFGEPFP KDPAYMPWGS SAGGPLGEVL 360 KISSSKRPHI ENPSGLNLMT KGWDGAKAQF EPSPTGVLLK SAFGSLSNSS AGSSPRGESR 420 MTSEAGSLCN DAPGSTTLVS SLPFS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890408.1 | 1e-146 | growth-regulating factor 1 isoform X1 | ||||
Refseq | XP_015890409.1 | 1e-146 | growth-regulating factor 1 isoform X2 | ||||
TrEMBL | A0A438FBN5 | 1e-139 | A0A438FBN5_VITVI; Growth-regulating factor 1 | ||||
TrEMBL | A5CAY7 | 1e-140 | A5CAY7_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0494g00010.t01 | 1e-139 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 6e-64 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0023s0071.2.p |