PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0023s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 581aa MW: 61695.9 Da PI: 8.0861 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.6 | 4.3e-23 | 217 | 261 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e Kaladp0023s0071.1.p 217 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 261 79****************************************985 PP | |||||||
2 | QLQ | 51.2 | 3.7e-18 | 146 | 181 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k Kaladp0023s0071.1.p 146 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 181 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.6E-10 | 145 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.477 | 146 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.9E-13 | 147 | 179 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.911 | 217 | 261 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-19 | 218 | 260 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MLYGGAVEAA AAAGVMDFGT KPKSDRPESA KRERSEDGQV GGGGGGQRRA KAAGKGGVDA 60 MLLMSSSAGG VVEGQLGSGS LVFEDERNML SFSSPGGAED EKMGQNAALQ LCYPQSVCSR 120 TSGDFGLAGS LTSPNMHAPF AGARQLFTQN QWFELEQQAL IYKYIAANVS VPSNLIIPIK 180 KSFNPWGLPG SISPNGSLSS SSFGWGPFHL GFHGSTDPEP GRCRRTDGKK WRCAKDAVHG 240 HKYCEKHLNR GRHRSRKPVE GQKPDQSVAG AANFANKVAP MASSLSKASV MPGGRSANGL 300 AAKGAHSTLN PFTDLITKRT QDLQGISMLS PAISLGSKDA SFAIPKPKDP FEESYQSEFG 360 FVSSDYLQNP YQKISSCLNS SFVDFSDQDS RDQHPLRQFM EDWPKERSEH SSLTWQDETK 420 PDWTKLSMAI PVVSSGLSSS ASSPTHERLA LSPLRLGLEF HQNEMGANEF GEPFPKDPAY 480 MPWGSSAGGP LGEVLKISSS KRPHIENPSG LNLMTKGWDG AKAQFEPSPT GVLLKSAFGS 540 LSNSSAGSSP RGESRMTSEA GSLCNDAPGS TTLVSSLPFS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890408.1 | 1e-147 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A438FBN5 | 1e-143 | A0A438FBN5_VITVI; Growth-regulating factor 1 | ||||
STRING | VIT_00s0494g00010.t01 | 1e-142 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-69 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0023s0071.1.p |