PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0023s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25065.1 Da PI: 8.3321 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.6 | 3e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ Cvl+p++ p++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++ Kaladp0023s0041.1.p 2 SCNGCRVLRKGCSETCVLRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISNVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGTGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelall 97 q++q+++e++l+ Kaladp0023s0041.1.p 92 QVCQAAVETVLR 103 ******999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.646 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCVLR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISNVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLGTGN WQVCQAAVET VLRGGTLRPV SADLLVSGRG 120 APPQPQEADE CSEEATCSNM WSASASRKRA TKKSNVTGGG GGGGGVRVSP PGSAELGLSL 180 SPGYEQRSEK RRRPGTPSEE SGTSFERGLN GHFEVEGQFE QQRRSSEARL LELFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR076542 | 2e-99 | KR076542.1 Boehmeria nivea lateral organ boundaries domain protein (LBD16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922590.1 | 3e-85 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SZE8 | 2e-76 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2H5PCU3 | 8e-81 | A0A2H5PCU3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SKD9 | 8e-81 | V4SKD9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006426065.1 | 1e-81 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-79 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0023s0041.1.p |