PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0022s0205.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GeBP | ||||||||
Protein Properties | Length: 420aa MW: 47354.6 Da PI: 4.6955 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 113.4 | 1.4e-35 | 126 | 224 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 klfqrlw++eDei lLqG++++ + +g s+++ d+ fye++k++++++++k+qlveK+rrLK+K+k+ ++++ gk++sf+++hdq + Kaladp0022s0205.2.p 126 KLFQRLWTDEDEIELLQGFLEYMTLRGISYHNhhDLGLFYEQIKSKLQLDFNKNQLVEKLRRLKRKYKNALSRTSAGKDISFKTPHDQAT 215 579*************************766545999***************************************************** PP DUF573 89 felskkiWg 97 +e+s+kiW Kaladp0022s0205.2.p 216 YEISRKIWS 224 ********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.8E-32 | 128 | 224 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MSSKEIEKPI FNDDDLDESD EDSEEEEDNL NRNLTPPPPR DLNDLLDDEE DDDVIDPGNV 60 NDEDDGFNSD PSLVTVAVPP PPQLDDSKAF SAKSDQKNPL QQQQQLYAVQ EDKKVQQQQH 120 LDDSRKLFQR LWTDEDEIEL LQGFLEYMTL RGISYHNHHD LGLFYEQIKS KLQLDFNKNQ 180 LVEKLRRLKR KYKNALSRTS AGKDISFKTP HDQATYEISR KIWSDLSSSK YGAAATNDED 240 THPVLPIPLP NLTPSPNYNF FNPTNNPPLH YAHMNGVHDE SQSQSTKKRS RVKIEEHRAS 300 DERIMMPDMG QGPGSSVALG PGIHGLIEET VKTYLSPLIN EALHKGANGL CATRGFGGVG 360 VLSPLALNFA SPSCFLGGEV SDKKWRKQQI LELEVYSQRL ELVQEHIKLA LEELRSGKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875499.1 | 2e-86 | probable transcription factor At3g04930 | ||||
Refseq | XP_024926809.1 | 2e-86 | probable transcription factor At3g04930 | ||||
Refseq | XP_024926811.1 | 2e-86 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2P5DKS4 | 2e-85 | A0A2P5DKS4_PARAD; DNA-binding storekeeper protein-related transcriptional regulator | ||||
STRING | XP_010090273.1 | 5e-85 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-70 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0022s0205.2.p |