PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0021s0010.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 198aa MW: 22360.4 Da PI: 8.1207

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0021s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78.2	1.9e-24	10	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppG+rF Pt+ +l+ +yL k + + l++ +vi e+d++ ++P +L + v +++++wy +++++++++ g +r t+ gy Kaladp0021s0010.2.p 10 LPPGCRFFPTEPQLLRHYLSGKNSVFDhhLNV-NVIGEFDVLGHDPAELIEigcfeyGVGGRRRHWYCYAPSAERKRVGG--RRRTRGGY 96 79***************9986665511555.77**********7456776555557779999999988877654..566899 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 Wk +g+ ++v+ ++g ++g ++ vf + +a+ g tdWv+ ey+l Kaladp0021s0010.2.p 97 WKRKGRVRDVVGEGGVVIGRRTDYVFClrRFEAKCGALTDWVVYEYAL 144 ************************97566999**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-29	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	31.804	10	159	IPR003441	NAC domain
Pfam	PF02365	3.1E-13	11	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MADPQAPLPL PPGCRFFPTE PQLLRHYLSG KNSVFDHHLN VNVIGEFDVL GHDPAELIEI 60 GCFEYGVGGR RRHWYCYAPS AERKRVGGRR RTRGGYWKRK GRVRDVVGEG GVVIGRRTDY 120 VFCLRRFEAK CGALTDWVVY EYALIEEDKD FVLCRAFQKS SQRKDVSQDM ASILEQGDFI 180 ELDDLSKPLS SMGNAAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	2	161	9	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_B	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_C	2e-19	2	161	12	170	NAC domain-containing protein 19
3swm_D	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_A	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_B	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_C	2e-19	2	161	12	170	NAC domain-containing protein 19
3swp_D	2e-19	2	161	12	170	NAC domain-containing protein 19
4dul_A	2e-19	2	161	9	167	NAC domain-containing protein 19
4dul_B	2e-19	2	161	9	167	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282899.1	4e-47	PREDICTED: NAC domain-containing protein 72 isoform X1
TrEMBL	F6H1B7	1e-45	F6H1B7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g10250.t01	2e-46	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-14	NAC family protein

Link Out ? help Back to Top
Phytozome	Kaladp0021s0010.2.p