PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0021s0010.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 214aa    MW: 24080.2 Da    PI: 7.4636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0021s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.82.4e-24101441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                          lppG+rF Pt+ +l+ +yL  k +  +  l++ +vi e+d++ ++P +L +       v +++++wy +++++++++ g   +r t+ gy
  Kaladp0021s0010.1.p  10 LPPGCRFFPTEPQLLRHYLSGKNSVFDhhLNV-NVIGEFDVLGHDPAELIEigcfeyGVGGRRRHWYCYAPSAERKRVGG--RRRTRGGY 96 
                          79*****************9986665511555.77**************7456776555557779999999988877654..566899** PP

                  NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          Wk +g+ ++v+ ++g ++g ++  vf   + +a+ g  tdWv+ ey+l
  Kaladp0021s0010.1.p  97 WKRKGRVRDVVGEGGVVIGRRTDYVFClrRFEAKCGALTDWVVYEYAL 144
                          **************************97566999************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-297159IPR003441NAC domain
PROSITE profilePS5100531.80410159IPR003441NAC domain
PfamPF023653.9E-1311144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADPQAPLPL PPGCRFFPTE PQLLRHYLSG KNSVFDHHLN VNVIGEFDVL GHDPAELIEI  60
GCFEYGVGGR RRHWYCYAPS AERKRVGGRR RTRGGYWKRK GRVRDVVGEG GVVIGRRTDY  120
VFCLRRFEAK CGALTDWVVY EYALIEEDKD FVLCRAFQKS SQRKDVSQVA NFGVSDNSYL  180
HDSLDMASIL EQGDFIELDD LSKPLSSMGN AAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1921619167NO APICAL MERISTEM PROTEIN
1ut4_B3e-1921619167NO APICAL MERISTEM PROTEIN
1ut7_A3e-1921619167NO APICAL MERISTEM PROTEIN
1ut7_B3e-1921619167NO APICAL MERISTEM PROTEIN
3swm_A3e-19216112170NAC domain-containing protein 19
3swm_B3e-19216112170NAC domain-containing protein 19
3swm_C3e-19216112170NAC domain-containing protein 19
3swm_D3e-19216112170NAC domain-containing protein 19
3swp_A3e-19216112170NAC domain-containing protein 19
3swp_B3e-19216112170NAC domain-containing protein 19
3swp_C3e-19216112170NAC domain-containing protein 19
3swp_D3e-19216112170NAC domain-containing protein 19
4dul_A3e-1921619167NAC domain-containing protein 19
4dul_B3e-1921619167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282899.11e-46PREDICTED: NAC domain-containing protein 72 isoform X1
TrEMBLF6H1B73e-45F6H1B7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10250.t015e-46(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-14NAC family protein