PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0021s0007.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 236aa    MW: 26222.3 Da    PI: 10.8222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0021s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-153179254
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         +++G+r ++ +g ++AeIrd ++    ++r++lg+f++ e A +a++aa+++l+
  Kaladp0021s0007.1.p 31 KFRGIRKRP-WGIYAAEIRDpWK----KTRVWLGTFDSVEAATRAYDAAARSLR 79
                         79*******.**********883....5**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6133188IPR001471AP2/ERF domain
CDDcd000182.82E-153188No hitNo description
Gene3DG3DSA:3.30.730.103.4E-273188IPR001471AP2/ERF domain
SMARTSM003808.8E-303194IPR001471AP2/ERF domain
PfamPF008473.5E-93179IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-183189IPR016177DNA-binding domain
PRINTSPR003677.8E-83243IPR001471AP2/ERF domain
PRINTSPR003677.8E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGKVRGGATA AASLGNQVKD APLEIGSAEL KFRGIRKRPW GIYAAEIRDP WKKTRVWLGT  60
FDSVEAATRA YDAAARSLRC PKAKTNFPTP PSSSIVFIFH RVAFGPSSSI VFMFGVVFES  120
SSSSSEPSSN ISKFNSSSSS SRAELELKKK LSSRVRALRI KARRVRAHVY INRAEFEYCD  180
TRLGSAHLHL CLTKQNTTLI FICSCYARHG IGASIFCSLY FVSVRKKKYD FQLMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-182588872Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-24ethylene responsive element binding factor 3