PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0216.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 555aa    MW: 61759.5 Da    PI: 5.0899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0216.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14356402455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kaladp0020s0216.3.p 356 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 402
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-112666IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.841352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-15356406No hitNo description
Gene3DG3DSA:4.10.280.107.3E-19356419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-12356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MEIMKTDISD FLDLTICILD FFNVDHQSAR VQTVLCIPLV DGVVEFGSTE LIHEDLGLVR  60
HVKTFFNDYN QSQHTPPPKP ALSGHSTSNP TASSDHFHSQ PLLAMYNAGM SSNNNHANSH  120
NQNDEENENE EEEEEGPGLD SEAETARVSG RVGAEVSEFM HMEMSDQDIR VGSPEDASNN  180
LEPDVNLLSA SRFKNNKDDH FTSESYKIES ARRWALMQDQ MRSGAVQIQP PPFSETTPLL  240
EDLTQEDSHY SHTVSSILQN QRQPPLPDSS AGILILSADS AFAKWTLHGD QVTATTIIGG  300
AGAGSQWLLK YILFTIPYLH AKYHEENEPS KSVDMSEAAQ RLKKGAGTPQ EDMSANHVLA  360
ERRRREKLNE RFVILRSLVP FVTKMDKASI LGDTIEYLKQ LRRKIQDLEV KTKQMEVEQR  420
SGLTSQERTW SGSGSDKKKM RAVEGTGTPK PVKVVEPPPP RAVEPLAIMD ANTVQVSIIE  480
TDALVELQCP HREGLLLDVM MKLRELRIEV TAVQSSVTDG SFVAELRAKV KENVNGKKMK  540
IAEVKRAICE IIPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14356418875Transcription factor MYC2
5gnj_B2e-14356418875Transcription factor MYC2
5gnj_E2e-14356418875Transcription factor MYC2
5gnj_F2e-14356418875Transcription factor MYC2
5gnj_G2e-14356418875Transcription factor MYC2
5gnj_I2e-14356418875Transcription factor MYC2
5gnj_M2e-14356418875Transcription factor MYC2
5gnj_N2e-14356418875Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERRRRE
2361366RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-177basic helix-loop-helix protein A
SwissprotE3SXU41e-149BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C7DWA51e-176A0A0C7DWA5_9MAGN; BHLH3 protein (Fragment)
STRINGEOX947961e-174(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-50bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]