PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0109.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 97aa    MW: 10896.4 Da    PI: 10.1021
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081256344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   + + +a + + ++   +W  +ar +g g++++++k ++
  Kaladp0020s0109.1.p 12 KWTPAQNKMFEKALAIYDKEtpdRWQNVARAVGGGKSAEEVKRHY 56
                         8*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-7962IPR001005SANT/Myb domain
PROSITE profilePS500906.0751160IPR017877Myb-like domain
SuperFamilySSF466891.06E-111167IPR009057Homeodomain-like
CDDcd001678.36E-61256No hitNo description
PfamPF002496.0E-61256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSMRGSG SKWTPAQNKM FEKALAIYDK ETPDRWQNVA RAVGGGKSAE EVKRHYDLLI  60
EDLSHIESGR VPLPNYKSNS LLFKDQQRLL KFLSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32496293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024168190.11e-42protein RADIALIS-like 3
SwissprotQ1A1733e-36RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3YB939e-41A0A2H3YB93_PHODC; protein RADIALIS-like 3
STRINGXP_009378514.12e-41(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-39RAD-like 6