PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0108.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 335aa    MW: 36532.2 Da    PI: 8.5495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10229276455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Kaladp0020s0108.1.p 229 SHSLAERVRREKISERMKYLQELVPGC----SKITGKAGMLDEIINYVQSLQ 276
                          8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17223294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.97E-11223280No hitNo description
PROSITE profilePS5088815.599225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17225293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7229276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MMLHCVNTSG GVSGGAELSV LERQRAHMKW QQQQQGLEYG NVHSVLPGYG GVGNQVQGQV  60
CGDSGVGQVG FPVVKPETGL DGTWTGFGNY GMPSVEDFMS CGYEDNSGAE YSYQMMNKAS  120
CPVEISEGRG SILSGRTNLG DAEGAKKRKA ENPASLKAVA DTGTKEKKIK EWAEDGESKI  180
TQPNTSINSK SKNKREASAD ASKDNPKVPE VQKTDYIHVR ARRGQATDSH SLAERVRREK  240
ISERMKYLQE LVPGCSKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVN PQLNFSIGSL  300
FGKEVFGPCT SSYPTLGKFN LKFIFLIQSH FIFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284113.15e-93PREDICTED: transcription factor bHLH63
TrEMBLA0A2N9EXW26e-95A0A2N9EXW2_FAGSY; Uncharacterized protein
STRINGVIT_03s0038g04760.t012e-92(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-55cryptochrome-interacting basic-helix-loop-helix 1